Bos indicus (zebu cattle): 109555345
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Entry
109555345 CDS
T04792
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04151
PI3K-Akt signaling pathway
biu04510
Focal adhesion
biu04512
ECM-receptor interaction
biu04820
Cytoskeleton in muscle cells
biu04926
Relaxin signaling pathway
biu04933
AGE-RAGE signaling pathway in diabetic complications
biu04974
Protein digestion and absorption
biu05146
Amoebiasis
biu05165
Human papillomavirus infection
biu05200
Pathways in cancer
biu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
109555345 (COL4A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109555345 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109555345 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109555345 (COL4A5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
109555345 (COL4A5)
09154 Digestive system
04974 Protein digestion and absorption
109555345 (COL4A5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
109555345 (COL4A5)
09162 Cancer: specific types
05222 Small cell lung cancer
109555345 (COL4A5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
109555345 (COL4A5)
09174 Infectious disease: parasitic
05146 Amoebiasis
109555345 (COL4A5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
109555345 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
biu04147
]
109555345 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
biu00536
]
109555345 (COL4A5)
Exosome [BR:
biu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109555345 (COL4A5)
Glycosaminoglycan binding proteins [BR:
biu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109555345 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109555345
NCBI-ProteinID:
XP_019811710
UniProt:
A0A6P5BMA7
LinkDB
All DBs
Position
X:34892143..35167132
Genome browser
AA seq
1691 aa
AA seq
DB search
MKLRGVSLAAGLSLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG
IQGPAGPPGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
LKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGLPGPPGLVIPRPGTGVTVGEKGN
IGLPGLPGDKGDRGFPGIQGPPGLPGPPGPAVIGPPGPPGFPGERGQKGDEGPPGISIPG
SPGLDGQPGAPGPPGPPGPPGPHIPPSDKICEAGPPGPPGSPGDRGLQGEQGMKGDKGDT
CFNCIGTGVSGPPGQPGLPGLPGPPGSLGFPGQKGEKGHAGATGPKGLSGIPGAPGAPGF
PGPKGEPGDILTFPGMKGDKGDLGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGMAFKG
ERGPPGNPGLPGLPGNRGPMGPVGFGPPGPVGEKGVQGGAGNPGQPGIPGPKGDPGQTIT
QPGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGI
PGPPGAPGSPGRIGLEGPSGPPGFPGPKGEPGFGLPGPPGPPGLPGFKGILGPKGDRGFP
GPQGPPGQAGLDGLPGPKGDIGPNGQPGPIGPPGLPGTGFQGPPGPPGIPGPIGQPGLHG
LPGEKGDPGPPGFDVPGPPGERGSPGIPGXXGPMGPPGSPGLPGKAGASGFPGAKGEIGM
MGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPAGEKGSKGEPGLPGLPGPMDPDLL
GSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLT
GPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPG
PKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKGQPGLPGFPGTPGLPGPKGISGPPG
NPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDEGLPGIPGNPGLPGPKGEPGFHGFPGLQGPPGPPGSPGPALEGPKGSPGPQGPP
GRPGPTGFQGPPGPEGPRGLPGSGAIKGERGNPGQPGQPGLPGLKGDQGPPGLQGNPGRP
GLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPEGDPGLIGPPGPPGLPGPSGQSIVIKGD
AGPPGIPGQPGLKGLQGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGT
RGLDGPPGPDGLQGPPGPPGTSSIAHGFLITRHSQTTDAPQCPQGTIQVYEGFSLLYVQG
NKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKG
QSIQPFISRCAVCEAPAVVIAVHSQTIQIPRCPQGWDSLWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTR
ISRCQVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcagcctggctgccggcttgtccttgctggccctgagtctttgg
gggcagcccgcagaggctgcggcttgctatgggtgttctccaggatcaaagtgtgactgt
agtggtataaaaggagaaaagggggagagaggatttccaggtttggaaggccacccaggt
ttgcctggatttccaggtccagaagggcccccagggcctcggggacaaaagggtgatgat
ggaattccagggccaccaggaccaaaagggatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggggccccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttcct
ggtttacagggtcctccaggacctcctgggatcccaggtatgaagggagaaccgggtagt
ataattatgtcatccctgccaggaccaaagggtaatccaggctatccaggtcctcctgga
attcaaggcccagctggtccccctggtataccagggccaattggtcccccaggaccacca
ggtttgatgggccctcctggcccaccaggacttccaggaccaaaggggaatatgggctta
aatttccagggacccaagggtgagaagggtgagcaaggtcttcagggcccccctgggcca
cctgggcagatcagtgaacaaaaaagaccaatcgatgtagagtttcagaaaggagatcag
ggacttcctggtgaccgagggcctcctggacccccagggatacgtggtcctccaggtcct
ccaggtggtgtgaaaggtgagaagggtgagcaaggagagcctggcaaaagaggtaaacca
ttaaaagatggagagaatggccaaccaggaattccaggtttgcctggtgatcctggttac
cctggtgaaccaggaagagatggagaaaagggtcaaaaaggtgacactggcctacctggg
cctcctggacttgtaatacctaggcctgggactggtgtaactgtaggagaaaaaggaaac
attgggttacctggcttgcctggagataaaggagatcgaggatttcctggaatacaaggt
ccacccggccttcctggacctccaggacctgcagttataggtcctcctggaccccctggc
tttcctggggaaaggggccagaaaggtgatgaaggcccacctggaatttccattcctgga
tctcctggacttgatggacagcctggggctcctggtcctcctggcccccctggccctccc
ggccctcacatccctcctagtgataagatatgtgaagcaggccctcctggccctccagga
tctccaggtgatagaggactccaaggagaacaaggaatgaaaggtgacaaaggtgacacc
tgcttcaactgtattggaactggtgtttcagggcctccaggtcagcctggtttgccaggt
cttccaggtcccccaggatctcttggtttccctggacagaagggcgaaaaaggacatgct
ggtgcaactggtcccaaaggattatcaggcataccaggagctccaggtgctccaggcttt
cctggacctaaaggtgaacccggtgacatcctcacatttccaggaatgaagggtgacaaa
ggagatttgggttcccctggagctccagggcttcctggtttacctggcacccctggacag
gatggattgccaggacttcctggccccaaaggagaacctggtggaatggcttttaagggt
gaaagaggtccccctgggaacccaggtttgccaggtctcccaggaaatagggggcctatg
ggccctgttggttttggtcctcctggtccagtaggtgaaaaaggcgtacaaggtggggca
ggaaatccaggccaaccaggaataccaggtcctaaaggtgatccaggtcagaccataacc
caaccagggaagcctggcctgcctggtcacccaggcagagacggtgaagtaggtcttcca
ggtgaacctggactcccaggccagccaggcttgccaggaatacctggtagcaaaggagaa
ccgggtatccctggaatcgggcttcctggaccacctggtcccaaaggttttcctggaatt
ccaggacctccaggagcacctggatcacctggaagaatcggtctagaaggtccttctggg
ccaccaggctttccaggaccaaagggagaaccaggatttgggctacctgggccacctggg
cctccaggactcccaggtttcaaaggaatacttggtccaaaaggggatcgtggtttccca
ggacctcaaggtcctccaggacaagctggcttggatgggctacctggaccaaaaggtgac
attggaccaaatggacaacctgggccaattggacctcctgggctgccaggaacaggtttt
cagggaccaccagggccaccaggaattcctggaccaataggccaacctggcttgcatgga
ctaccaggagagaagggggatccagggcctcctggatttgatgttccaggacctcctggt
gagagaggcagcccagggatccctggnnnnncaggtcctatgggacccccaggatcacca
gggctcccaggaaaagcaggtgcctctggctttccaggtgccaaaggtgaaatcggtatg
atgggacctccaggcccaccaggacctttgggaattcctggcaggagtggtgttcctggt
ctcaaaggtgatgatggtttgcagggtcagccaggacttcctggccctgcaggagagaaa
ggtagtaaaggagagcctggccttccaggccttcctgggccaatggatccagatctgctg
ggctcaaaaggagagaaaggggaccctggactaccaggtattcctggagttgcagggcca
aaaggttaccagggtttgcctggagacccagggcaacctggactgagtggacaacctgga
ttgccaggactagcaggtcccaagggtaaccctggtctccctggaatgccaggacttaca
ggacctcctggactgaaaggaaacatgggtgatatgggttttccaggcccacagggtcca
aaagggtctttcggacctcctggagttcctggacaacctggctccccaggactacctgga
cagaaaggagaaaaaggtgatcctggtatttcaggcattggtcttccaggtcttcctggc
ccaaagggtgaacctggtctgcctggatacccagggaaccctggtaccaaaggttctatg
ggagaaactggtttgcctggattaccggggacccctggagcaaaaggacaaccaggcctt
cctggattccctggaaccccaggccttcctggaccaaaaggtattagtggtcctcctggg
aaccctggccttccaggagaacctggtcctgtaggtggtggaggtcgtcctgggccacca
gggcctccaggtgaaaaaggcaagccaggtcaagatggtattcctggaccagctggacag
aagggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactt
tctggtcaaaagggtgatgaaggattacctggcattccaggaaaccctggccttccaggt
ccaaagggtgaaccaggctttcatggtttccctggtctgcagggtcccccaggccctcct
ggttctccaggtccagctctggaaggccctaaaggcagccctggaccccaaggtcctcct
gggagaccaggtcctacaggttttcaaggtccaccaggtccagaaggtccccggggtcta
cctggaagtggggctattaaaggagaaagaggtaacccaggccaacctgggcaacctggt
ttgcctggtttgaaaggtgatcaaggtcctccaggactccagggtaaccctggccggcca
ggtctcaatggaatgaaaggagatcctggtctccctggtgttccaggatttccaggcatg
aaaggacccagtggagtacctggttcaactggccctgagggggatccaggacttattggc
ccaccaggtccccctggattacctggtccytcaggacagagtattgtaatcaaaggagat
gctggcccaccagggattccaggccagcctggattaaaaggtttacaaggactcccagga
cctcagggtttaccaggtccaattggccctccaggagatcctggacgcaatggactccct
ggctttgatggtgcaggaggacgcaaaggagacccaggtttgccaggccagccaggtact
cgtggcttggatggtccccccgggccagatggattgcagggtcctccaggtccccctgga
acctcttctattgcccatgggtttctcatcacacgtcacagccagacaacagatgctcca
caatgcccacagggaaccatccaggtgtatgaaggcttttctctcctgtatgtacaagga
aataaaagagctcatggtcaagacttgggaacagccggcagctgccttcgtcgtttcagt
accatgcctttcatgttctgcaacatcaataatgtttgcaactttgcttcaagaaatgat
tattcttactggctctccaccccagagcccatgccaatgagcatggaacccctgaagggg
cagagcatccagccattcattagtcgatgtgcagtatgtgaagctccggccgtggtgatt
gcagtccacagtcagaccatccagattccccgttgtcctcagggatgggattctctctgg
attggttattccttcatgatgcacacaagtgcaggggcagagggctcaggccaagccctg
gcctcccctggttcctgcttagaagagtttcgttcagctcccttcattgagtgtcatggg
cgggggacctgcaactattacgccaactcctacagcttttggctggcgactgtagatgtg
tcagacatgttcagcaaacctcaatcagaaacgctgaaagcaggagacttgaggacacgt
attagccgatgtcaagtgtgcatgaagaggacataa
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