Bos indicus (zebu cattle): 109555516
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Entry
109555516 CDS
T04792
Symbol
PABPC5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03015
mRNA surveillance pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109555516 (PABPC5)
09123 Folding, sorting and degradation
03018 RNA degradation
109555516 (PABPC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109555516 (PABPC5)
03041 Spliceosome [BR:
biu03041
]
109555516 (PABPC5)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109555516 (PABPC5)
mRNA cycle factors
Stress granule specific factors
109555516 (PABPC5)
Spliceosome [BR:
biu03041
]
Complex C
Other components
Complex C specific factors
109555516 (PABPC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
109555516
NCBI-ProteinID:
XP_019812008
UniProt:
A0A6P5AZJ1
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Position
X:25323074..25325301
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AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNR
ALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDE
MNGRIVGSKPLQVTLGQARRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggggagcctaatcctgctggcaagaaaaagaagtacctcaaggctgccctg
tatgtgggtgacttggacccagatgttactgaggacatgttatataaaaagttcaggcct
gctggacctctgcgcttcactcgaatctgccgtgacccggtgacccgcagccccctgggc
tatggctacgttaacttccgctttcctgcggatgctgagtgggcactgaacaccatgaat
tttgatttgattaatggcaaaccattccgtctaatgtggtctcagccagatgatcgctta
agaaagtctggaattggaaatatattcatcaaaaacctggacaaatccattgacaacagg
gcccttttttatctgttttcagcttttgggagcattctctcctgcaaagtcgtatgcgat
gacaatggctctaagggttatgcctatgtgcactttgacagcctggccgctgccaatagg
gccatctggcacatgaatggagtgcggctcaacaaccgccaggtgtatgttggccgattc
aaatttccggaagagagggctgctgaagttagaactagggataaagcgactttcactaat
gttttcgttaaaaactttggagatgacatggatgacgacaaactgaaggaacttttcagc
gagtatgggccaactgaaagcgttaaggtaataagagattccagtgggaaatcgaaaggc
tttggatttgtgagatatgagacacatgaggctgcccaaaaggctgtgttagatctgcat
ggaaagtccatcgatgggaaagtgctctatgtagggcgagcacagaagaaaattgaacgt
cttgctgagttaaggagaagatttgagcggctgagattaaaagaaaaaagtcggcctcca
ggggtgcctatctatattaagaacctggacgagaccattgatgatgaaaaactgaaggag
gaattttcttcctttgggtcaattagtcgggccaaagtgatggtggaggtggggcaaggc
aaagggtttggtgttatctgcttctcctcttttgaagaggctaccaaagcagtagatgag
atgaatggtcgcatagtgggctccaagcctctgcaagtcactctgggccaggccaggcgc
aggtggtga
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