Bos indicus (zebu cattle): 109556465
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Entry
109556465 CDS
T04792
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03015
mRNA surveillance pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109556465 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
109556465 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109556465 (PABPC4)
03041 Spliceosome [BR:
biu03041
]
109556465 (PABPC4)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109556465 (PABPC4)
mRNA cycle factors
Stress granule specific factors
109556465 (PABPC4)
Spliceosome [BR:
biu03041
]
Complex C
Other components
Complex C specific factors
109556465 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
RRM_3
ApbA_C
Motif
Other DBs
NCBI-GeneID:
109556465
NCBI-ProteinID:
XP_019813325
UniProt:
A0A6P5BPJ1
LinkDB
All DBs
Position
3:113564331..113578107
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AA seq
661 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAAPRAVAPY
KYASSIRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMH
SNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAAT
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggacaccatgaactttgatgtaattaagggaaag
ccgatccggatcatgtggtctcagagggacccgtctctgagaaaatctggtgtgggaaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttgggaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gccgaacttggagccaaagccaaggaattcaccaatgtttacatcaaaaactttggggaa
gaggttgatgatgagaatctgaaagagctatttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcactgggaaggtc
attttcgttggccgtgcacaaaagaaagtggagcggcaggccgagttaaagcgaaaattt
gaacagctgaagcaggagaggattagtcgctatcagggggtgaatctctacattaagaac
ttggatgacaccatcgatgacgagaagttaaggaaagagttttctccttttgggtcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaaggrtttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacagagatgaatggacgcatcgtgggctcc
aagccactttatgtcgctctggcccagagaaaggaggagagaaaggctcacctgaccaac
caatatatgcagcgggtggccgggatgagggcactgcccgccaaygccatcttaaatcag
tttcagcctgcagctgggggctactttgtgccagcagttccacaggctcagggaagacct
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgcggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
aacttagcgcctcgtgccgctgttgctgctgctgctgctcctcgggctgttgcaccttac
aaatatgcctccagcatccgcagtcctcacccggccatccagcccctgcaggcaccccag
cctgcggtccacgtgcaggggcaggagccgctgaccgcctccatgctggctgcagcaccc
ccccaggaacagaagcagatgctgggtgaacgtctgttcccactcatccagacgatgcac
tcgaacctggctgggaagataactgggatgctgctggagatcgacaactcagagctgctg
cacatgctggagtcccccgagtctctccgctccaaggtggatgaggctgtggcggtcctt
caggctcatcatgccaagaaagaagctgctcagaaggtgggcgctgttgctgctgctacc
tcttag
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