Bos indicus (zebu cattle): 109556543
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Entry
109556543 CDS
T04792
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04136
Autophagy - other
biu04140
Autophagy - animal
biu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109556543 (ATG16L1)
04136 Autophagy - other
109556543 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109556543 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
biu04131
]
109556543 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
biu03029
]
109556543 (ATG16L1)
Membrane trafficking [BR:
biu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
109556543 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
109556543 (ATG16L1)
Mitochondrial biogenesis [BR:
biu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109556543 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
eIF2A
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_HPS5
CCDC93_CC
Beta-prop_NWD2_C
APEH_N
Vma22_CCDC115
HTH_6
PALB2_WD40
Phage_GPO
DUF2332
Fez1
Motif
Other DBs
NCBI-GeneID:
109556543
NCBI-ProteinID:
XP_019813488
UniProt:
A0A6P5B4R3
LinkDB
All DBs
Position
3:120266096..120310424
Genome browser
AA seq
623 aa
AA seq
DB search
MSSGLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEK
HDVPNRHEISPGHDGSWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEMQMNEAKIAEYLQTISDLETECQELRTKLQDLERANQTLKDEYDALQITFTALEEKL
RKTSEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVLVDETSEHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSDAAR
RRSVSSFPVPQDNVDPHPGAGKEVRVPTTAMSVFDAHDGEVNAVQFSPGSRLLATGGMDR
RVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ
TFSAPGFKCGSDWTRAVFSPDGSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVA
WSPAGSHVVTVDKGSKAVLWSEY
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgctgccgtcttcccgcgttggaagcgccacatctcggaggag
ctgaggcgccgggaccggctgcagaggcaggcgttcgaggagatcatcctgcagtataac
aagttgctggaaaagtcagatcttcaytcagtgctggcccataagctacaagccgaaaag
catgacgtaccaaacaggcatgagataagtcccggacatgatggttcatggaatgatagt
cagctgcaagaaatggcccagctgagaattaaacaccaagaagagctgactgaactgcac
aagaaacgtggggagttagcccagttggtgattgacctgaataaccaaatgcagcagaag
gacaaggagatgcagatgaacgaagccaaaattgcagaatacctgcagaccatctctgac
ctggagaccgagtgccaggagctacgcactaagcttcaggaccttgaaagagccaaccag
accctgaaggatgaatatgacgccctgcagatcactttcaccgcccttgaggagaagctg
cggaaaacttccgaggagaaccaggagctggtcacccggtggatggcygagaaagcccag
gaggccaaccgcctaaacgcggagaatgaaaaggactcaaggaggcggcaagcccggctg
cagaaggagctcgcagaagcagcgaaggagcctctgccagttgagcaggatgatgatatt
gaagtcctcgtggatgaaacctctgagcaccctgaggagacctctcccgtgcgagccatc
agcagagcggccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgagtctccccttttgggacatcactcttctgatgctgccagg
aggcgctctgtctcttcctttccagttccccaggataacgtggatcctcatcccggtgct
ggtaaagaagtgcgagtgccgacgactgcaatgtctgtctttgacgcgcatgacggggag
gtcaacgctgtgcagttcagcccaggttcccggctcctggccacgggaggcatggatcgg
agggtgaagctctgggaagtgtttggagacaaatgtgagttcaagggctccctgtctggc
agtaatgcaggaattacaagcattgaatttgatagtgctggatcttacctcttagcagct
tcaaatgattttgcaagccgcatctggaccgtggatgactaccggttacggcacacgctc
acgggacacagtggcaaagtgctgtctgccaagttcctgctggacaatgcgcgcatcgtt
tctggaagtcacgaccggaccctcaaactctgggatctacgcagcaaagtctgcataaag
acagtatttgcgggatccagctgcaatgacattgtctgcacagagcagtgtgtgatgagc
gggcattttgacaagaaaattcgtttctgggacatccgatcagagagtattgtccgagag
atggagctcttgggaaagatcactgccctggacttaaatccagaaagaactgaactcctc
agctgctctcgagatgacctgctgaaaattatagacctacgaataaatgctgtcagacag
acattcagcgcgccaggcttcaagtgtggctccgactggactagagctgtgttcagccct
gacggtagttaygtagcagcgggcgcggccgagggctcgctgtacatctggaacgtgctg
tctgggaaagtggagaaggtcctctcaaagcatcacagctcgtccatcaacgcggtggcc
tggtcccccgccggctcccacgtggtcactgtggacaaaggaagtaaggccgtgctgtgg
tcggagtattga
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