Bos indicus (zebu cattle): 109558388
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Entry
109558388 CDS
T04792
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
biu
Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
biu04121
]
109558388 (PDZRN4)
Enzymes [BR:
biu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109558388 (PDZRN4)
Ubiquitin system [BR:
biu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
109558388 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
109558388
NCBI-ProteinID:
XP_019815380
UniProt:
A0A6P5BRY1
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Position
5:complement(42525885..42551028)
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AA seq
685 aa
AA seq
DB search
MEDDTKGQVLLGGYLDMRLLNKHQNNSTPLRMQRKHSEKEHFPPEMTSRNEVELCRVSSQ
EKLGLTVCYRTDDEEDTGIYVSKVDPNSIAAKDGRIREGDRILQINGEDVQDREAAVAQL
SSDECRRILLLVARPESQVDEGWLEDERNELLEELNLAMLEEQHNEVMQRTADEVEQPKK
QEEEEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENATEDPNGTSLKSKRELGQS
QDTLGSVELQCNESFVSGEYIDSDCIGNQDEECERFRQLLELKCKIRKHGEYDLYYSSST
IECNQGGREGVEHELQLLNEELRNIELECQTIMQTHRLQKVTDQYGDIWALHDGGFRSYN
TSIDTQRGKLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVISLTNKKN
LRSTMAANQSSSGQNTKESTCTKAKTSEQGCVIEGKEKTSESSKLSDPEKTSSEHIPYLS
PYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSVCKESQKCSEPKMEWKV
KIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLV
RAKEQRRRREFMMRSRLECLKESPQSGSEGKKEVNIIELSHKKMMKKRNKKILDNWMTIQ
ELMTHGAKSPDGTQVPNAFLSVTTV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgataccaagggccaggttttgctaggaggatatttagatatgcgtctttta
aacaaacaccaaaacaatagtacaccattgagaatgcagagaaaacactcagaaaaagaa
cacttccctccggagatgacttcccgcaacgaggtcgagttgtgtcgtgttagcagtcaa
gagaagctgggtctgacagtctgttaccgaacggatgatgaagaagacaccggcatttat
gtcagcaaggtggatccaaacagcatcgctgcaaaagacggccgaattcgagaaggggat
cgtattttgcaaataaatggggaagacgtccaggatcgcgaggcggcggtggcccagctg
tctagcgatgagtgcaggagaatcctgctgctggtcgcaaggccagagagtcaggtggat
gaaggctggctggaagatgaaaggaatgaattattagaggagttaaacttggcgatgttg
gaagaacagcataatgaagtgatgcagcgcactgctgatgaggtggagcagccaaaaaaa
caagaagaagaagaaggcacaacagatacggcaacatcctcatccaataaccatgagaag
gacagtggagtggggcgcacagatgaaagcttgcggaatgacgagagctcagagcaggag
aatgcaaccgaggatcccaatggcacatctctgaaaagcaaaagagagctggggcagagc
caagacaccctgggaagcgttgaacttcagtgcaatgagagttttgtgtctggtgaatac
attgactcagactgtattggcaaccaagatgaggagtgtgaaagatttcggcagctcttg
gagctcaaatgcaagataaggaagcatggggagtatgacctgtattactcaagcagcaca
atagaatgcaatcagggaggacgagagggagtggagcatgaactacagttgcttaatgaa
gaactgagaaacattgaacttgagtgccaaactatcatgcagactcacaggctccagaaa
gtgacagaccagtatggagatatctgggcattgcatgatggaggattccgaagttataat
accagcatagatacccagagggggaaactagatgacatccttgaacacccagaaaagtca
gacaaagacagttcgagtgcttacaacacagctgaaagttgcagaagcactccactcact
gtggaccgttcccctgacagttcccttccaagagtgatcagcctcaccaataagaaaaat
ctgagaagcacaatggcagccaaccagtcctcttctggacagaacactaaagagtcaacc
tgcaccaaagccaaaacctctgaacaaggctgtgtcattgaaggcaaagagaagacttca
gaaagcagcaagctttctgatccagagaagaccagcagtgaacacatcccttatctctct
ccttaccacagctcctcctatagatatgcaaacatcccagcacatgctaggcattatcaa
agctacatgcagttaattcaacagaagtccgcagtcgagtacgctcagagtcagctcagc
ttggtgagcgtgtgcaaggagtctcagaagtgctcagaacccaagatggaatggaaggtg
aaaatcaggagcgacgggacgcggtacatcaccaagaggcccgtgcgggaccgcattcta
aaggagcgtgccttaaagatcaaggaggagcggagtggcatgaccacggacgatgacacc
atgagcgagatgaagatggggcgctactggagcaaagaggagaggaaacagcacttggtg
cgggccaaggagcagcggcgccgccgcgagttcatgatgcggagccggctggagtgtctc
aaggagagtccgcagagcggcagtgagggcaagaaggaggtcaacatcattgaactgagt
cacaaaaagatgatgaagaaaagaaacaagaaaattttggacaactggatgacaatccaa
gaactgatgacccatggggccaagtcccctgatggtacacaagttcctaatgcctttttg
tctgtcaccacagtatga
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