Bos indicus (zebu cattle): 109559169 Help Entry 109559169         CDS       T04792                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism biu  Bos indicus (zebu cattle) Pathway biu04151   PI3K-Akt signaling pathway biu04510   Focal adhesion biu04512   ECM-receptor interaction biu04974   Protein digestion and absorption biu05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:biu00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     109559169 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109559169 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     109559169 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     109559169 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     109559169 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:biu00536]     109559169 (COL2A1) Glycosaminoglycan binding proteins [BR:biu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109559169 (COL2A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  109559169 NCBI-ProteinID:  XP_019816262 UniProt:  A0A6P5BNE8 LinkDB All DBs Position 5:35475805..35506226 Genome browser AA seq 1487 aa AA seqDB search MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGQPGPKGQKGEPGDIKDIVGPKG PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAXPPGPVG PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKG SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGARG LPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPXGPPGEKGEPG DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG PIGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtgggcaacca ggaccaaagggacagaaaggagaacctggagatatcaaggacatcgtaggacccaaggga cctcctggacctcagggacccgcaggtgaacaaggacccagaggtgatcgtggtgacaaa ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac cctggcccccctggtcctcccggcccccctggcccccctggccttggtggaaactttgct gcccagatggctggtggatttgatgagaaggctggtggcgcccagatgggagtaatgcag ggaccaatgggccccatgggacctcggggacccccaggccctgctggtgctcccggacct caaggatttcaaggcaaccctggtgaacctggtgaacccggtgtttctggtcccatgggc ccccgtggtcctcctggcccccctgggaaacctggtgatgatggtgaagctggaaagcct ggaaaatctggcgagagaggccctcctggccctcagggtgctcgtggtttcccaggaacc ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga gaagctggtgctccaggtgtgaagggtgagagtggttccccaggtgagaacggttctcca ggcccaatgggtccccgcggcttgcctggtgagagaggacggactggccctgccggcgct gcaggtgctcgaggcaatgacggtcagccaggccctgcnnngcctccgggtcctgtgggt cctgctggcggtcctggctttcctggtgctcctggtgccaagggtgaagctggccccacc ggtgctcgaggtcccgaaggcgcccagggtcctcgcggtgaaccgggtactcctgggtcc cctgggccagctggtgctgctggcaaccctggaactgatggaatccctggagccaaggga tctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtccaccc ggccctcaaggtgcaactggtcctctgggcccaaaaggtcaaacgggtgagcctggtatt gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaagga gcccctggtcctgctggtgaagaagggaaaagaggtgcccgtggagaacctggtggtgct gggcccgccggtccccctggagaaagaggcgctcctggaaaccgtggtttcccaggtcag gatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggcctcgctggt cccaaaggcgccaacggtgaccctggccgtcccggagagcctggccttcctggagcccgg ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccggagcc cctggtgaagacggtcgccctggacccccaggtcctcagggggctcgtgggcagcctggt gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa ggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggtgct gcaggcccccctggacccgctggaccagctggtgaacgaggcgagcagggtgctcctggg ccatctgggttccagggacttcctggccctcccggccccccaggtgaaggtggaaaacca ggtgaccagggtgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa cgaggtttcccaggagaacgtggctcccccggttcccagggcctccagggggcccgcggt ctccccggcactcctggcactgatggtcccaaaggcgcagctggcccagctggcccccct ggggctcagggccctccaggtctgcagggcatgcccggtgagaggggagcagctggtatc gccggacccaagggagacaggggtgatgttggtgagaaaggccccgagggcgcccccggg aaggacggtggacgaggtctgactggccccattggcccccctggcccagccggagccaac ggtgagaagggagaagttggaccccctggtcctgctggaactgctggtgctcgaggtgcc ccgggtgaacgtggagagacaggcccccctggacctgctggattcgccggtccccctggt gctgatggccagcctggtgccaaaggtgaacaaggagaagccggccagaaaggtgacgct ggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg accggtcctaaaggagcccgaggtgctcaagggcccccgggagccaccggattccccgga gcagctggccgcgtcggacccccaggctccaatggcaaccctggaccccctggtcctcct ggtccttctggaaaagatggtcctaaaggtgctcgaggcgacagtgggccccctggccga gctggtgaccctggcctccaaggtcctrctggaccccctggcgagaagggagagcctgga gatgatggtccttctggtcccgatggtcctccaggtcctcagggtctggctggtcagagg ggcatcgttggtctgcctggacagcgtggtgagcgaggattccccggcctccccggcccc tcgggtgagcctggcaagcagggagcccctggagcatctggagaccgaggtccccctggc cctgtgggtcctcctggcctgactggtcctgctggtgagcctggacgtgagggaagcccc ggtgctgacggcccccctggcagagatggcgcagctggagtcaaaggtgaccgtggagag accggtgccgtgggtgctcctggagcccctgggccccctggctctcctggccccgctggc ccaattggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacctgca ggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa actggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcagggt ctgcccggcccccctggtccttctggagaccagggtgcttccggtcctgcaggtccttcc ggccccagaggtcctcctggtcccgtcggtccctctggcaaagatggtgctaacggaatc cctggccccattggacctcctggsccccgtggacgttccggcgagactggccctgctggt cctcctggaaaccctggaccccctggccctcctggcccccccggccctggcatcgacatg tccgcctttgctggccttggccagagagagaaaggccccgatcctctgcagtacatgcgg gccgacgaggcagccggcaacctgagacagcatgatgccgaggtggacgccacactcaag tccctcaacaaccagatcgagagcctccgcagccccgagggctcccgcaagaacccagct cgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactggatc gaccccaaccagggctgcaccctggatgccatgaaggttttctgcaacatggagactggc gagacctgcgtctaccccaacccggccagcgtccccaagaagaactggtggagcagcaag agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgcctg ctgtccaccgagggctctcagaacatcacctaccactgcaagaacagcattgcctacctg gacgaagctgctggcaacctcaagaaggctctgctcatccagggctccaacgacgtggag atccgggctgagggcaacagcaggttcacatataccgttctgaaggatggctgcacgaaa cacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcccgtctg cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac atagggcctgtctgcttcttgtaa

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