Bos indicus (zebu cattle): 109559360
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Entry
109559360 CDS
T04792
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109559360 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109559360 (PAN2)
Enzymes [BR:
biu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109559360 (PAN2)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109559360 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
109559360 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
Motif
Other DBs
NCBI-GeneID:
109559360
NCBI-ProteinID:
XP_019816584
UniProt:
A0A6P5BTN0
LinkDB
All DBs
Position
5:61457320..61471285
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AA seq
1202 aa
AA seq
DB search
MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPTLERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTDSSTLLIGGLQNHILE
IDLNTVQETQKYTVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLATCGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDLQELEVPQAYRGAGGSSFCSSGDSVIGQLFSCE
MENCSLCRCGSETVRASSTLLFTLSYPEGSNSDKTGKNCDFAQVLKRSICLEQNTQAWCD
NCEKYQPTIQTRNIRHLPDILVINCEVNSLKEADFWRMQAEVAFKMAIKKHSGEISKNKE
FALADWKELGSPEGMLMCPSIEELKNVWLPFSIQMKMTKNKGLDVCNWTDGDEMQWGPAR
AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP
IDKHEAVQFDMNWKVPAILYYIKRNLNSKYNLNIKNPIEASVLLAEASLARKQRKTHTTF
IPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE
GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV
GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA
RTALQLYRKYLELSKNGTEPESFHKVLKSLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL
AL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgagggtctggaccctggacttgcagagtatgccccggccatgcattctgcc
ctggatcctgtcctggatgcccacctgaacccgagtctgctacagaacgtggagctggac
ccggagggagtggccctagaggctcttccagtccaggagtcagtgcacataatggaaggt
gtctactctgagttgcacagtgtggtggctgaagtgggtgtgcctgtctccgtctcccac
tttgacttgcacgaggagatgctgtgggtgggaagccatgggggccatgccacatcattt
ttcggcccaactttggagcgctactcatcatttcaggtcaatggcagtgacgacatccgc
cagatccagagcctggagaatggcatcctttttcttaccaagaacaacctcaagtatatg
gcccgagggggcctcattatatttgattacctgctggatgagagtgaagatatgcacagc
ctgttgctgactgacagcagcactctgctcattggtgggctgcagaaccacatattagag
attgacctgaacactgtccaggagactcagaagtacacagttgagacacctggagtcact
atcatgagacagacgaatcgcttcttcttctgtggccacacatctggcaaggtttctctg
cgagatctccgtacttttaaggtggaacatgagtttgatgccttctcagggagcctgtca
gattttgacgtgcatggcaacctgctggccacctgtggcttctccagccgccttactggt
ctggcctgtgaccgtttcctcaaagtttatgatctacgcatgatgcgtgccatcacacca
cttcaagttcacgtggatcctgccttcttacgcttcatccctacatatacttctcgtctt
gctatcatctcccagtcagggcagtgccagttttgtgagcccacaggcctggccaaccca
gcagacatctttcatgtgaatcctgtgggacctctgctaatgacgtttgatgtgtcagcc
agcaagcaggccctcgcttttggggattctgagggctgtgtgcacctctggactgattcc
cctgagccttccttcaacccgtactcccgtgagaccgagtttgctttgccctgtctcgtg
gactcactgccgcctctggactggagccaggacctactgcctctttccctcatccctgtc
ccgctcaccactgacacgcttctctctgactggcctgctgccaactctgctccagctccc
aggcgagcaccgcctgtggatgcagagattctgcgcaccatgaagaaggtgggcttcatc
ggctatgcacccaatccccgcaccaggctgcgaaatcagattccttaccgactcaaggag
tctgacagtgaatttgacagcttcagccaggtcactgagtcaccaatagggcgggaagag
gagccacatctccacatggtctctaagaagtaccgcaaggtgaccatcaaatactccaag
ctagggctggaggactttgacttcaagcactacaataagacgctgtttgctggattggag
ccccacatccccaatgcctactgtaactgcatgatccaggtgctctatttcctggagcct
gtgcgctgtctaatccagaaccacctttgccagaaggagttctgcctggcctgcgagctg
ggcttcctcttccacatgttggacctctcccgaggcgacccctgtcagggcagtaatttt
cttcgagcattccgcaccattcctgaggcctcagcccttggtctgattttggctgactca
gatgaggcttcgggcaagggcaacctggccaggctcattcagaggtggaaccgtttcatt
ctcacgcaacttcatcaagatttgcaggagctggaagtaccccaggcttaccgaggtgct
ggaggcagcagcttttgctcatcgggggactctgtcattgggcagctgttcagctgtgag
atggaaaattgcagcctctgccgctgtggcagtgagaccgtgcgagcctcatccacactg
ctcttcacgctctcttaccctgagggtagcaacagtgataaaaccgggaagaactgtgac
tttgctcaggtgttgaagcgaagcatctgcctggagcagaatacacaggcctggtgtgac
aactgtgaaaagtaccagcccacgatccagacccgcaacatccgccatctgccagatatt
cttgtcatcaactgtgaggtgaacagtttgaaagaagctgatttctggaggatgcaggct
gaggttgccttcaagatggcaataaagaagcatagtggggaaatctccaagaataaggag
tttgctttggctgattggaaggaactaggcagtccagagggcatgctgatgtgtccctcc
attgaggagttgaagaatgtctggcttcctttctccattcaaatgaagatgaccaagaac
aaagggctggatgtttgcaattggactgatggggatgagatgcagtggggcccagccagg
gcagaggaagagcatggtgtctatgtgtatgacctgatggcaactgtggtacacatcctg
gactcacgcacagggggcagcctggtggctcacatcaaagttggagagacctaccaccag
cgcaaggagggtgttacccaccagcagtggtatctcttcaacgactttctcattgaacct
atcgataagcatgaagctgtgcagtttgacatgaattggaaagtgcctgctatcctttat
tacatcaaaaggaatcttaattccaaatacaacctgaacattaagaatcctattgaggca
agtgttctgctggctgaagcctcattagcacggaagcagcggaaaacacatactactttt
attcccctgatgctgaatgagatgccacaggttggggacttggtgggcctggacgctgag
tttgtcacccttaatgaggaagaagcagagctgcgcagtgatggcaccaagtctaccatc
aagccaagccagatgtcagtggcgaggattacctgcgttaggggccagggacccaatgag
ggtatccccttcattgatgactacatctctacccaggagcaggtggtggattacttgact
cagtactcagggataaagccaggagaccttgatgccaagatttcctctaagcacctcaca
actctaaagtctacctacttaaagcttcgttttctcatagacattggagtcaagtttgtg
ggtcacggtctgcaaaaggacttccgggtcatcaacctcatggtgcccaaggaccaagtc
cttgacactgtttatctatttcacatgccccggaaacgaatgatttccctgcgattcctt
gcttggtactttctagacctgaagattcaaggggagacccatgacagtattgaggatgcc
cgcacagcccttcagctttaccgaaagtatctggaactaagcaaaaatggcactgagcct
gagtccttccacaaagttctcaagagcctttacgagaaaggtcgaaagatggactggaag
gtgcctgagcctgagggccagacaagtcccaagaatgcagctgtcttctcttcagtgctg
gcactctga
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integrated database retrieval system
