Bos indicus (zebu cattle): 109559482
Help
Entry
109559482 CDS
T04792
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
biu
Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
biu03016
]
109559482 (RTCB)
Enzymes [BR:
biu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109559482 (RTCB)
Transfer RNA biogenesis [BR:
biu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109559482 (RTCB)
Prokaryotic type
tRNA splicing ligases
109559482 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
109559482
NCBI-ProteinID:
XP_019816813
UniProt:
A0A6P5BU99
LinkDB
All DBs
Position
5:complement(76041953..76070676)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcagttcttggaaaagatcagtaagaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
tctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccatcggtcttcctgatgtccattcaggttatgggtttgctattggaaatatggca
gcctttgatatgaacgaccctgaagcagtggtatccccaggtggtgttgggtttgacatt
aactgtggtgtccgcttgctgagaaccaatttagatgaaagtgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtggggtcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagccagggctaaaaaaagaggccttccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtygccacagatgcacttgtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaattgcttcc
ccagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggacgggaaggagcggactctgttagtacacaggaaggggtccacccgagcc
ttccctcctcaccatcccctcattgcggttgattaccaacttaccggacaaccagtgctc
attggtggcaccatgggaacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaagtcaaga
cgtaatttagatttccaggatgtcctcgacaaattggcagacatgggaattgcaatccgt
gtcgcctcacccaagctggtaatggaagaggcccctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgaggccaatt
gctgttatcaaaggatag
DBGET
integrated database retrieval system
