Bos indicus (zebu cattle): 109560017
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Entry
109560017 CDS
T04792
Symbol
RFC1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03030
DNA replication
biu03410
Base excision repair
biu03420
Nucleotide excision repair
biu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109560017 (RFC1)
03410 Base excision repair
109560017 (RFC1)
03420 Nucleotide excision repair
109560017 (RFC1)
03430 Mismatch repair
109560017 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
biu03032
]
109560017 (RFC1)
03400 DNA repair and recombination proteins [BR:
biu03400
]
109560017 (RFC1)
DNA replication proteins [BR:
biu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109560017 (RFC1)
DNA repair and recombination proteins [BR:
biu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109560017 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
AAA
BRCT
AAA_22
BRCT_2
AAA_14
RuvB_N
PTCB-BRCT
AAA_5
Rad17
AAA_7
AAA_16
AAA_30
AAA_18
nSTAND3
AAA_17
AAA_33
RNA_helicase
AAA_19
NTPase_1
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
109560017
NCBI-ProteinID:
XP_019817602
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All DBs
Position
6:complement(60881701..60964760)
Genome browser
AA seq
1137 aa
AA seq
DB search
MDIRKFFGVIPSGKKLVSETVKKNEKTKSAEESLKAKKGIKEIKVNSSCKEDEFKPKQSN
KKKRIIYDSDSESEETVQVKNAKKRPEKLPRSSKLAKIQQQDPVTYISETDEDDDFVCKK
TASKLKENGGSTNSYLGASNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSIQRSDKK
MVASRRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKAKK
AEKDAEERETFSSVQVNLCKAEKPKYPHKGKTKQFSDERKNXSPKKQTKCEGSRQSQQRS
RSSAHKTGETSPKASSKLALLKKKEESSNKETESMASKRKENVIELKETRTPKKMKSSPA
KKESVSPDEAEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITRVLESIE
RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKTVSQFGLLIFSRGEIEVIHFG
QDDHMKKEKSKLERTPQKNDQGKRKSSPTKKESESKKCKLTPKRESSIKSLKKEASVSQR
GLDFKEQAAEETNGDSRARNLADDSRESKVESLLWVDKYKPTSLKTIIGQQGDQSCANKL
LRWLQNWHKSPSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYS
YVELNASDTRSKNSLKEIVAESLNNTSIKGFYSSGTVHSVGTRHALIMDEVDGMAGNEDR
GGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKE
GLKIPPPAMNEIILGANQDIRQVLHNLNMWCARNKALTYDQAKADSHRAKKDIKLGPFDV
ARKVFVSGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRA
ADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFPSWLGKYSSMGK
HDRTVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVQPLASQGIEGVQDVVALMDAYYLM
KDDFENIMEISSWGGRPSPFSKLDPKVKAAFTRAYNKEVHLTPYSLQAVKTHRHSTGPSL
DSEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKPSKSEKDKESRKGKGKSSKK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaaacaaagtctgctgaagaaagtttaaaagcaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaagaagatgaattcaagccaaagcagtcaaac
aagaaaaagaggatcatctatgattcggattcagaatcagaggaaacagtacaggtaaaa
aatgccaaaaagcgaccggaaaaattgccacggtcttctaaacttgctaaaattcaacag
caggatcctgttacctacatttcagaaacagatgaagatgatgactttgtgtgtaagaag
acagcctctaaattaaaagaaaatggaggatctacaaatagttatcttggagcatcaaac
atgaaaaagaatgaggaaaacactaagaccaagaataagcctttgtcaccaataaaactt
acccccacatcagtgcttgattattttggaactggaagcatccaaagatcagataagaag
atggtggcaagcagaagaaaagagccttcacaaaatgcagatgattccagattaaatgat
gaagccatcgccaagcaattacaacttgatgaagatgcagagctggagagacaactgcat
gaagatgaagagtttgccagaacgttggccatgttggatgaagaacccaaggccaaaaag
gctgaaaaggatgcagaagaaagagagacattttcatctgtacaagtcaatttatgtaaa
gcagagaaacctaaatatcctcataaaggtaaaactaaacaattttcagatgaaagaaag
aacntcagccctaagaagcaaactaagtgtgaaggttcaagacaatcccagcaacgttcc
aggtcatcagctcataaaacaggagaaacttctccaaaagccagttctaagctggcactt
ttgaaaaaaaaagaagagagttctaataaagaaacagagtctatggcctcaaaaagaaaa
gaaaatgttattgagttaaaagagacaagaactcctaagaaaatgaaaagttctccagct
aaaaaagagtctgtaagtcctgatgaggctgaaaagagacgcactaattatcaagcttac
cgaagctacttaaatcgagaaggtcccaaagctctgggctccaaagaaataccaaaggga
gctgaaaattgcttggaaggccttacgtttgtaatcacaagagtgctggagtccattgaa
cgagatgaggccaagtctctaattgagcgttatgggggaaaagtgacaggaaatgtcagc
aagaaaaccaactacctggtcatgggtcgtgacagtggccagtccaagagtgacaagact
gtctctcaatttgggctgttgatcttttctcgtggtgagattgaggttatacattttggg
caagacgaccatatgaagaaagaaaaatccaaattggaaagaacaccccaaaaaaatgat
caaggaaaaagaaaaagtagtccaactaagaaggaatcagaatctaaaaagtgcaaactg
actcccaaaagggaaagctctataaagtcactaaaaaaggaagcaagtgtgtctcagaga
ggcctggacttcaaggagcaggcggctgaggagacaaatggtgacagccgggctaggaat
ttggctgatgacagcagagaaagcaaagtggaaagtttgctctgggtggataagtataag
ccaacctcgctcaagaccataattggacagcaaggtgaccagagctgcgccaacaaactc
ctgcgctggctccaaaactggcacaagagtccatccgaagataagaaacacgcggcaaaa
tttggtaaatttgctggcaaagatgatggctccagttttaaagcggcattgctctcaggt
cctcctggtgttggcaaaacaaccacagcttctctggtttgtcaggaattgggatatagc
tatgtggaactgaatgcaagtgacactcggagtaagaacagtttgaaggagattgttgct
gagtcgctgaataataccagcatcaaaggcttttattcaagtggaacagtccattcagta
ggcacgaggcatgctctcatcatggatgaagtagatggcatggctggcaatgaggacagg
ggaggaattcaggaattaattggcctgataaaacatacaaaaattcccattatttgtatg
tgcaatgatagaaatcatcccaagattcgctctttggttcattattgttttgatcttcgt
tttcaaagacctcgggttgaacagattaagggtgctatgatgtctattgcatttaaagag
ggtctaaagatcccccctccagctatgaatgaaataattttgggagctaatcaagatatc
agacaggttttacacaatctgaatatgtggtgtgcacggaataaggcactaacctatgac
caggccaaggctgattctcatagagccaaaaaggacatcaaactgggcccgtttgatgtt
gcccggaaagtgtttgtaagtggagaggagactgctcatatgtcacttatggacaaatca
gacctcttcttccatgattattcaatagcacccctctttgtccaggagaactacatacac
gtgaagcccgtggctgcagggggtgacatgaaaaagcacttgatgcttttaagcagagca
gcagacagcatatgtgatggtgacctagtrgaccgtcaaatccggaataagcaaaactgg
agtcttctgcccacacaggccatttatgccagtgttcttcctggagagttaatgaggggg
tacatgacccagtttcctaccttcccaagttggttggggaagtactcatctatgggcaaa
cacgatcgtactgttcaggacctggctttgcatatgagtctcagaacttactccagcaar
aggacagtaaacatggattatctgtcacatataagagatgcacttgtacagcccttggcc
tcacaagggatagaaggagtacaggatgttgttgctcttatggatgcatattatttgatg
aaagatgacttcgagaatattatggaaattagcagctggggaggcagacctagtccgttc
tctaaactggatcccaaggtgaaagcagccttcacaagagcttacaataaagaagtccac
ctcactccgtattcactccaggcagtaaagacacacagacacagcacaggcccatctctg
gattctgaatacaatgaagagttaaatgaagatgactctcagtctgatgagaaagaccag
gacactttggaaactgatgctatgatcaagaaaaagacaaaatcttcaaagccttcaaaa
tcagaaaaagataaggagtccagaaaaggaaaaggaaaaagttcaaagaaatga
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integrated database retrieval system
