Bos indicus (zebu cattle): 109560814
Help
Entry
109560814 CDS
T04792
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03013
Nucleocytoplasmic transport
biu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109560814 (UPF1)
03015 mRNA surveillance pathway
109560814 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109560814 (UPF1)
Enzymes [BR:
biu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109560814 (UPF1)
5.6.2.5 RNA 5'-3' helicase
109560814 (UPF1)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109560814 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109560814 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_Zn_bind
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109560814
NCBI-ProteinID:
XP_019818862
UniProt:
A0A6P5C0V0
LinkDB
All DBs
Position
7:complement(4261809..4297751)
Genome browser
AA seq
1052 aa
AA seq
DB search
MVTTSVFKSLGGQRRPPGGPGGGGARDPVGALPGAAAGQLDAQVGGPEGILQNGAVDDSV
AKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSG
SHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRRRM
GAGGQRLQLDTPGGAGPEQTAGTAENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIF
GPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRY
KGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSA
LKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRP
LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA
KSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAEREL
LMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQL
GPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVT
AADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAK
PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE
HQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNL
RESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQI
GMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFG
LPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggtaaccacatccgtcttcaaaagcttaggcgggcagagacgcccacccggcggcccc
ggaggtggcggcgcgagggacccagtcggagccctcccaggcgcggcggccggacagctc
gacgcgcaggttggtggccctgagggcatcctgcagaacggggccgtggacgacagcgtg
gccaagaccagccagttgttggccgaattgaactttgaagaagatgaagaagatacctat
tacacaaaggatctgcctgtacatgcctgcagttactgtggaatacacgatcctgcttgc
gtggtttactgtaacaccagcaagaagtggttctgtaatggacgtggaaatacttctggc
agccacattgtaaatcaccttgtgagggcaaaatgcaaagaggtgactctgcacaaggat
gggcccctaggggagacggttctggagtgttataactgcggctgccgcaacgtcttcctc
ctcggcttcatccctgccaaggccgactcggttgtggtgctgctgtgcaggaggaggatg
ggagctggtggtcagcgactgcagctggacacgccaggaggagccgggcccgagcagaca
gccgggactgcggagaacccttctgccaccttggaggacctggagaagccyggagtggac
gaggagccgcagcacgtcctcctgcgctacgaggacgcctaccagtaccagaacatattt
gggcctctggtcaagctggaggctgactacgacaagaagctgaaagagtcacagactcaa
gataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctacttcact
ttgcccaagactgactctgacatgcggctcatgcaaggggatgagatatgcctgcggtac
aaaggggacctggcgcccctctggaaagggatcggccacgtcatcaaggtccctgataat
tatggcgatgagattgctattgagcttcggagcagcgtgggcgcccctgtggaggtgact
cataacttccaggtggatttcgtgtggaagtcaacctcattcgacagaatgcagagcgca
ctgaaaacctttgccgtggatgagacctccgtgtcgggctacatctaccacaaactgctt
ggccatgaggtggaggatgtgatcatcaagtgccagctgcccaagcgcttcacggcacag
gggctccccgacctcaaccactckcaggtttacgccgtgaagactgtgctgcagagacca
ctgagtctgatccagggcccaccgggcacaggaaagaccgtgacctcagccaccatcgtc
taccacctggctcggcaaggcaacgggcctgtgctggtctgtgctccaagcaacatagcc
gtggatcagctgactgagaagatccaccagaccgggctgaaagtcgtgcggctctgcgcc
aagagccgcgaggccatagactccccggtgtccttcttggccctgcacaaccagatcagg
aacatggacagcatgccagagctccaaaagctgcagcagctgaaggatgagactggggag
ctgtcgtcggcggacgagaagcgttacagagccctgaagcgcactgccgagagggagctg
ctcatgaacgcagatgtcatctgctgcacgtgtgtgggcgcaggagacccgaggctcgcc
aagatgcagttccgctccattttaatcgacgaaagcacgcaggccaccgagccagagtgc
atggtccctgtggtccttggagccaagcagctgatcctcgtgggtgaccactgccagctg
ggccctgtggtgatgtgcaagaaggcggccaaggccgggctgtcgcagtcgctctttgaa
cgcctggtggtgctgggcatccgccccatccgcctccaggtccagtaccggatgcacccc
gcgctcagcgccttcccgtccaacatcttctacgagggctctctccagaatggcgttacc
gcagcggatcgtgtaaagaaggggtttgactttcagtggccccaaccggataaaccaatg
ttcttctatgtgacccagggccaagaggagattgccagctcaggcacctcctacctgaac
aggacggaggctgcaaacgtggagaagatcaccacgaagctgttgaaggcgggcgccaag
ccrgaccagattggcatcatcacgccctacgagggccagcgctcctacctggtgcagtac
atgcagttcagcggctccctgcacaccaagctctaccaggaggtggagattgccagcgtg
gacgcgttccaggggcgtgagaaggactttatcatcctctcctgtgtgcgggccaatgag
caccaaggcattggatttttgaatgaccccaggcgactcaacgtggccttgaccagagca
cgatacggggtcattatcgtgggcaacccgaaggccctgtccaagcagccgttatggaac
cacctgctgaactactacaaggagcagaaggtgctggtggagggacccctgaacaacctg
cgggagagcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccggga
gcccgcttcatgacgacagccatgtatgatgcccgggaggccatcatcccagggtcggtc
tatgaccggagcagccagggccggccctcgaacatgtacttccagacccacgaccagatt
ggcatgatcagcgccggccccagccacgtggctgccatgaacatccccattcccttcaac
ctggtcatgccgcccatgccgccaccggggtattttggacaagctaatgggccagccgca
ggccgaggcaccccgaaaggcaagactggtcgtggggggcgccagaagaaccgctttggg
cttcctgggcccagtcagacgaatctccccaacagccaggccagccaggatgtggcgtcc
cagcccttctcccagggcgccctgacccaaggctacatctccatgagccagccctcccag
atgagccagcccggcctctcccagcctgagctgtcccaggacagctaccttggagatgag
tttaagtcacagatcgacgtggcgctgtcgcaagactccacataccagggcgagcgggcg
taccagcacggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
