Bos indicus (zebu cattle): 109561243
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Entry
109561243 CDS
T04792
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109561243 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
biu04147
]
109561243 (COL18A1)
00535 Proteoglycans [BR:
biu00535
]
109561243 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
biu00536
]
109561243 (COL18A1)
Exosome [BR:
biu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109561243 (COL18A1)
Proteoglycans [BR:
biu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109561243 (COL18A1)
Glycosaminoglycan binding proteins [BR:
biu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109561243 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
109561243
NCBI-ProteinID:
XP_019819191
UniProt:
A0A6P5C0R9
LinkDB
All DBs
Position
1:148054223..148106463
Genome browser
AA seq
1753 aa
AA seq
DB search
MAPDPSSGRGHHGLLLLACCLSAAQADLFSWIWXGNSAWPIAAPASKPPDSSPVWPTEDT
TTHVAPRDAPTDWWKVSASPTAPLGRPEVGQGQTPTGPTASTVSLDPKEENIAGVGAKIL
NVAQGIRSFVQLWDNAKDTTPAESSAGAETPPPTDTMDDLSTPGPSITPQDSGTTLQLST
TALSSPDTQRTEAGTLPMPTQPPPSPGRPWFRESLVSPTPGRSSLSSVPAPAPPRGSQLP
LGRPLQLDGEGLLLAAARPGQQHADDRRPMPPLPPLVTGSLGKHTALWALSSDPPAKLSH
VAVSALTVDSGAWAPHVANSAGPGLANKSTLLGAAELAATEQPVPTTAGRCLPLLPSLAL
CGHLGIRRSWWPNHLHHTSREEVQAAVPAWGALLRTHCHRFLAWFFCLLLAPPCGPGLPP
GLPPCRQFCEALEDACWSXLDGRGLPLPCASLPAREDGHCVFIGPPADEEVVEVGLQQLL
GEPPPWQVAMVHDPDVGSAYEFGEDGSGGGQAARRLLPGXFFQDFSLLVRVRPASARAGV
LFAVTDPXQAVVSVGVKLTAARGGRQHMQLLYTEPGATHTRTAASFELPALDGRWTRLAL
SVDGAYARLFVDCKEVQGQPLAHSLHDLQLEPDARLFVAQAGGADPEKFQGLISELRLRR
DPQVSPRQCQDEDEDDDDDGASGDLGSGLVETQEHLREELGAPLGPRLPEAPPVTSPPLA
GVGNEEDLRTEEVEESTTASSLGAQTLPSLGTVGTWDESVWSPGSSVKERGLKGQKGEPG
AQGPPGPIGPQGPAGPAIDSHEAQPVSGPQGPPGPPGPPGKDGTPGRDGEPGDPGEDGKP
GDTGPQGFPGTPGDVGPKGEKGDPGVGXRGPPGPQGPPGPPGPSFKPDRLTFIDMEGSGF
GGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGRPGP
PGPPGTPGKDGQPGLTGQKGSLGEAGAPGPKGSKGDPGPVGAPGEHGLAGAPGPAGPPGP
PGPPGPPGPGFAAGFDDMEGSGSPLWSTARGAEGLQGPPGTPGVKGDPGAVGPPGSKGEV
GADGAPGLPGLPGREGAAGPQGPKGEKGTQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVS
EQDRVLASVPGPEGRAGFAGFPGPAGPKGDLGXKGQQGIPGPKGEKGEPGTFFGPDGRAL
TPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFGMR
GPAGPPGPPGPPGPPGTPVYDSNAFVDSGRPGPPGLPGHQGPSGLKGDKGDVGPPGPPGQ
FPFDLLQLGAEMKGEKGDRGAAGQKGERGEPGGGGFFGSGVPGPPGPPGYPGIPGPKGXS
IRGQPGPPGPQDPLAWLRGTPGPPGAPGPQAPGPLSFLTSQPHPSVSPEAPPQGSTGLGF
QQVRVWATYQMLVDQVPQVPEGWLIYVADREELYVRVRNGFRKVLLEAHVPLPHGTDNEV
AVLQPPLVQLHEGNPYPRREVPHPTARSWRADDILASPPRLPHPQPYPGAPHHGAYAHLR
PVPPTASPSHTHHDFQPVLHLVALNSPQSGGLRGIRGADFQCFQQARXXGLAGTFRAFLS
SRLQDLYSIVRRADRATLPVVNLRDEVLFPSWEALFSGSEGQLKPGARIFSFDGRDVLQH
PTWPQKSVWHGSDPSGRRLTESYCETWRTDSRAATGQASSLLAGRLLEQKAAGCHNAFIV
LCIENSFMTSSSK
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagcggccgmggccaccacggcctcctgctgcttgcctgctgc
ctctcggccgcccaggctgacctgttctcctggatatggyctgggaacagtgcctggccc
atagctgcgccagcctccaagcccccggacagctcacctgtgtggcccacggaggatacc
accacgcacgtggccccccgggatgctcccaccgactggtggaaagtctctgccagcccc
acagcccctctggggaggccggaggtggggcagggccagacccccactggccccacggcc
tccaccgtgagcctggacccaaaggaggaaaacatcgccggcgtcggagccaagatcctg
aacgtggctcagggcatccggagctttgtccagctgtgggacaacgctaaggacaccacc
cctgccgagagctctgccggggcagagacgccgccccccacggacaccatggacgacctc
tccacccctggaccctccatcaccccccaggacagtgggaccaccctccagctgagcacc
acggccctgagctctccagacacccagaggactgaggccggcaccctgccaatgcccacc
cagccgccaccctcccccggcagaccctggttcagggagtccttggtatcgccgacccca
ggtagatcttctctttcctccgtgccggccccggcgcctccccggggaagccagctgcct
ctcgggcggcccctgcagctggacggtgaaggactcttgcttgcagcagcccgtcccggc
cagcagcatgctgacgaccgcaggcccatgccgcctctgcctcccctggtgacgggttcc
ctgggcaagcacactgccctctgggctctctcctctgacccccctgccaaactgtctcat
gtcgcagtctcagctctaactgtggacagtggtgcttgggctccccacgtggctaattct
gcggggcctggtcttgctaacaagtccacactgctcggggctgctgagctggctgccacc
gagcagcctgtccccaccaccgctggccgctgcctgcccctgctgccctccctggctctc
tgcggccacctgggcatcagacgctcctggtggcccaaccacctccaccacacaagtcgg
gaggaggtgcaggccgcggtcccagcctggggggcactgctccggacccactgccaccgc
ttcctggcctggttcttctgcctgctgctggcacccccctgcgggcccggcctgccgccc
ggcctgccaccctgtcgccagttctgcgaggccctggaggacgcatgctggagccrcctg
gacgggcgcgggctgccactcccctgygcctcgctcccggcccgcgaggacgggcactgc
gtgttcatagggccaccrgcagacgaagaggtcgtggaggtagggctccagcagctgctc
ggggagcccccgccctggcaggtggccatggtgcacgaccccgacgtggggtccgcctat
gagttcggcgaggacggcagcggtggaggccaggcggcccggagactcctgcctggcrcg
ttcttccaggacttctcgctgcttgtgcgtgtgcggccggcctcggcgcgygcgggcgtg
ctctttgcggtcacagacccgscgcaggcagtggtctcggtgggcgtgaagctgacggcg
gcgcgtggggggcggcagcacatgcagctgctgtacacggagccgggagccacccacaca
cgcacagccgccagcttcgagctgcccgcgctggatggtcgctggacgcgcctggcactc
agcgtggatggcgcctatgccaggctcttcgtggactgtaaggaggtccagggccagccc
ctggcgcactcrctgcacgacctgcagctggagccggacgcccgcctcttcgtggcccag
gccggtggagcagaccctgaaaagttccagggtctgatctcagagctgaggttgcgcagg
gatcctcaggtgagcccccggcagtgccaggatgaggacgaggacgacgatgatgatggg
gcgtccggagacctgggcagygggctcgtggagacccaggagcatctccgggaggagttg
ggtgcgcccctggggcccaggctcccygaggctcctccggtcacttctccacccttggcc
ggagtcggcaacgaggaggacttgagaactgaggaagtagaggagtcaaccacagcgtct
tcattaggagctcagaccctccccagcttgggcacagttggcacgtgggatgagagtgtt
tggagccctgggagcagcgtgaaagagcgaggcctgaaggggcagaagggagagcctggc
gctcagggcccccctggccccatcggcccccagggtcctgcaggcccagccatagacagc
catgaggcacagcctgtttctggaccacagggaccccctgggcccccgggacccccgggg
aaggacggcacccctggaagggacggtgagcctggtgatcctggtgaagacgggaagccc
ggggacactgggccacagggcttcccagggaccccaggagacgtgggccccaagggcgag
aagggggatcctggagtcggacygaggggacccccaggaccccaggggcctccggggccc
ccagggccctccttcaaacccgacaggctgaccttcatcgacatggagggatccggtttt
ggcggcgacctggagagcctccgcggccctcgcggcttccccggccccccagggccccct
ggcgtcccaggcctgccaggagagccaggccgcttcgggatgaacagctcggacgtccct
ggacccgcaggcctgcccggcgtgcctgggagggacgggccgcctgggcgtccagggccc
ccgggacccccaggtactccaggaaaagacggacaaccaggactgactggacagaaaggc
agcctcggtgaggcaggcgccccaggaccmaagggaagcaagggagaccctggccccgtc
ggcgctcctggggagcatggcctggcaggagcccctggacccgcaggcccaccagggccc
cctggccccccggggccccckggcccaggattcgccgcagggtttgaygacatggaaggc
tccgggagccccttatggtcaacagcccgaggtgccgaggggctgcagggaccgcctggc
acgcccggagtcaagggggatcctggagctgtggggccaccagggagcaagggagaagtt
ggagcagacggagcaccgggcctccccggcctcccgggcagagagggtgcagctggaccc
cagggaccaaaaggagaaaaaggcactcagggagagaaaggagacccagggaaggatgga
gtggggcagccaggactcccgggacccccyggacccccagggcctgtcgtctacgtgtcr
gagcaggatagagtgctggcgagcgtgccaggccccgagggccgtgcaggcttcgctggc
ttccccggaccagccgggccaaagggagacctgggckccaaaggccagcagggcatcccg
ggacccaagggtgagaagggagagccgggcacattcttcggccccgatggcagagcactg
acccccgcccagaaaggagccaagggtgagcctggcttccgaggacctccgggtccgtat
gggcggcccgggcacaagggagagatcggattccctggacggccggggcgtcccgggatg
aacgggctgaaaggggagaagggggagccgggggacgccagcgtgggattcggcatgagg
ggtccagctggcccacctgggcctccggggcccccaggccctcccgggactcctgtctac
gacagcaacgcatttgtggactctggccgccctggacccccaggattgccagggcaccag
gggccttctggactcaagggtgacaaaggagacgtgggcccgcccggaccgccagggcag
ttcccgtttgacctcctccagctgggtgccgagatgaagggggagaagggggaccgaggg
gccgctgggcagaaaggagaaaggggtgagcccgggggcggaggattcttcggctccggt
gtgcctggcccccccggcccgcctggctacccggggattccgggccccaagggagasagc
atccgcggccagcccggccctccgggacctcaggaccccctggcatggctacgagggacc
ccagggcctcctggggcccccggaccccaggccccgggacccctttccttcctgacgtcc
cagccccacccctctgtgagccctgaggcccctccgcagggatccactgggctgggcttc
cagcaggtgagggtctgggccacgtaccagatgctggtggaccaggtgccgcaggtgccg
gagggctggctcatctacgtggccgacagggaggagctgtacgtccgggtccggaatggg
ttccggaaggttctgctggaggcccacgtgcccctcccccatgggacggacaacgaggtg
gccgtcttgcagcccccgctggtgcagctgcatgagggtaatccctacccccgccgggag
gttccacacccgacagcgcggtcctggcgggcggacgacatcctggccagtcccccgcgc
ctgccgcacccccagccctaccccggcgccccgcaccacggcgcctacgcacacctccgg
ccggtgccccccacggcctcgccctcccacacccaccacgacttccagccggtgctgcac
ctggtggcgctcaacagcccgcagtcgggcggcctgcgcggcatccgcggcgccgacttt
cagtgcttccagcaggcgcgcnnnncggggctggccggcaccttccgcgcgttcctgtcc
tcgcggttgcaggacctgtacagcatcgtgcgccgcgccgaccgtgccaccctgcccgtc
gtcaacctcagggacgaggtgctgtttcctagctgggaggccttgttctcaggctccgag
ggccagctgaagcccggcgcccgcatcttctccttcgacggcagagatgtccttcagcat
cccacctggccccagaagagcgtgtggcacggctcagaccccagcgggcgccggctgacc
gagagctactgcgagacgtggcggacggacagcagggcggccacgggccaggcctcctcg
ctgctggcrggccggctgctggagcagaaagccgccgggtgccacaacgccttcattgtc
ctctgcatcgagaacagcttcatgacctcctcctccaagtag
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