Bos indicus (zebu cattle): 109561642
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Entry
109561642 CDS
T04792
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109561642 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109561642 (XAB2)
03041 Spliceosome [BR:
biu03041
]
109561642 (XAB2)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109561642 (XAB2)
Spliceosome [BR:
biu03041
]
Complex B
Other components
Prp19-related factors
109561642 (XAB2)
Complex C
109561642 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
109561642
NCBI-ProteinID:
XP_019819806
UniProt:
A0A6P5C2M6
LinkDB
All DBs
Position
7:complement(14915973..14924860)
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AA seq
855 aa
AA seq
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MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctttcgaggcccgagcgaccggaccttgtgttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggctccgc
tacatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggca
caggtgaagcatcgctgcgtgactgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacgcgccgaactttcgaccgggccctccgggcattg
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccccgaaagcgct
gaggagtatattgagtacctcaagtcaagcgaccggctggatgaggcagcgcagcgcctg
gccaccgtggtgaacgacgaacgcttcgtgtcgaaggccggcaagtctaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaatgtg
gacgccatcatccgtgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggctgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgtttgacagctatgcc
caattcgaggagagtatgatcgcggcgaagatggagaccgcctcggagctggggcgggag
gaggaggatgacgtagacctggagctacgcctggcccgcttcgagcagctcatcagccgg
cggcctctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgccctcgggagatcatcaatacgtacacggag
gctgtgcagacggtggaccccttcaaagccaccggcaagccccacacgctgtgggtcgcg
tttgccaagttttacgaggacaacgggcagctggacgatgcccgcgtcatcttggagaaa
gccaccaaggtgagtttcaagcaggtggacgacctrgccagtgtgtggtgcgagtgtgga
gagctggagctccggcatgagaactacgaccaggccttgcgacttctgcggaaggcgaca
gcgctgcctgcccggcgcgccgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaggcagtgtacgaccgcatcctggacctgcgcatcgccacgccgcagatc
gtcattaactacgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgcggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacctac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgagcacgtgacctcttt
gagcaggcgctggatggctgccctcccaaatatgccaagacgctgtacctgctgtacgcg
cagctggaagaagagtggggcctggcgcggcacgccatggcagtgtatgagcgtgccacc
agggctgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagcatctatcagaaggccattgaggtgctgtct
gacgagcacgcccgggagatgtgcctgcggttcgctgacatggagtgcaagctcggggag
atcgaccgcgcccgggccatatacagcttctgctcgcagatctgcgacccccggacgacc
ggggccttctggcaaacgtggaaggactttgaggtccggcatggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcaccgtgtccgacctggcc
cccgggcagagcggtatggatgacatgaagctgctggagcagcgtgccgagcagttggcg
gccgaggcggagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggctgagctggcccagcaggccaacccagaggagattgag
ctgggcgaggacgaggatgaggatgaaatggacctggagcccaacgaggtgcgcctggaa
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagactga
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