Bos indicus (zebu cattle): 109562974
Help
Entry
109562974 CDS
T04792
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
109562974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
biu04131
]
109562974
Membrane trafficking [BR:
biu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
109562974
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Ig_2
ATG2_CAD
Motif
Other DBs
NCBI-GeneID:
109562974
NCBI-ProteinID:
XP_019821656
LinkDB
All DBs
Position
8:55754853..55853729
Genome browser
AA seq
1479 aa
AA seq
DB search
MWFLEEPNEAVKRAPMPELVPKGEIIKMNIDSIFLVLEAGIGHRTVPMLLAKSRFSGEGK
NWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIKMKKKAKTAIVE
SGTEEENYRVPEYKTVITFYSKDQLNITLSKCGLIMLNNLAEAFTEAATGSSATFIRDLA
PFMILNSLGLSISVSPSESFSVLNLPMAKSYVLKNEESLSMDYMRTKDNDHFNAMTSLSS
KHFFILLTPANHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQIDAVEGSKKVTVRSPV
QIRNHFSIPLSVYGGDTLLGTASPGSEFNIPLASYRSLLSLKPEDADYQMCEGIDFEEII
KQDGTSFKKKCRPINPSRKPFIINIVPEKDNLTYMSVYSEDRWDLPYIIHLWPPILLRNL
LPYKIAYYIEGIEHRVFTLHEGRSAQLCTVQLDKARLHLKLLDYLNHDWKSEYHIKPNQQ
DISFISFTCVTEIEKTDLDIAVHVTYNTGQTIMAFHSPYWMVNKTGRMLQYKADGIHRKH
PPNYKKPVLFSFQPKHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAVKCKGPKMEYQVGV
TIDLSSFNITRIVTFTPFFLIKNKSKYHISVAEEGNDKWLALDLEQCVPFWPEDASNKLL
IRVERSESPPHKIHFNKEESCILLRLDNELGGIIAEVNLAEHSTVITFSDYRDGAATFLL
INHTKNDIVQYKQSSLSEIEDSLPPGKAVFYTWADPVGSRKLQWKCGKSHGEVTQKDDMM
TPINLGKTTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAEQEIVLALQDVGISLV
NNYTKQEVAYIGITSSDVVWETKPRKKARWKPMSVKHTEKLEKEFKEYVESSPSEDKVIE
LDTNILVRFTPGASNMKILQPHVIAIRRNYLPALKVEYSTSAHQSSFRIQIYRIQIQNQI
HGAIFPFVFYPIKPPKSVTLDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLIQEMDLRLD
LGFVYAVSELMTPAEVTEKTEVELFHKDIEAFQEEYKIVSLVDSSQVSLYEYFHISPIKL
HLSVSLSSGGEEPKDSEQHEGLMAIRSLHLLLKSIGATLTDVQDVVFKLAFFELNYQFHT
TAELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPE
EFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGL
REGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGATGFFKGVGKGLVGAVTRPTGGIIDM
ASSTFQGIKRATETSDEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMENGRFAKYKY
FTHVMINKTDMLMITRSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVHERRLRIEAKER
VKSVFHAKEFGKIVNFRTPEDARWILRKLEEAREPSPNL
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgtggtttcttgaagaaccaaatgaagctgtaaaaagagctcccatgcctgaattggta
cccaaaggagagataataaaaatgaacattgattctatttttctggttcttgaggctgga
attggtcatagaacagtacctatgctattggcaaaatcacgtttctcaggggaaggcaaa
aactggagttccttaatcaatctccactgtcagcttgagctagaagtacattattacaat
gaaatgtttggtgtgtgggagcctttgcttgaacccttagaaattgatcagactgaggat
tttagaccatggaatcttggaatcaagatgaaaaagaaagccaaaacggccattgttgag
tcaggtactgaagaagaaaattacagagtaccagaatacaaaactgtcatcactttctat
tcgaaagaccagctaaacattacattatctaaatgtggccttataatgttaaataattta
gctgaggcatttacagaagctgccactggatcttcagctaccttcataagggatctggca
ccttttatgattttaaattctcttggacttagtatttctgtttcaccaagtgaatctttt
agtgtactcaacttacctatggcaaaatcatatgtattgaaaaatgaggagagtttaagt
atggattatatgcgaactaaagacaatgatcatttcaatgcaatgaccagcctaagcagc
aaacacttcttcattcttcttacccctgctaaccactctactgctgataaaatcccttta
acaaaagtgggacgacgactgtacactgtaagacacagagagtctggagttgaaagatca
attgtttgtcagattgatgcagtggaaggaagtaagaaggtaacagttcgctctccagtg
cagattagaaatcatttttcaataccactttctgtttatggaggagacacgttattggga
acggcctcacctggaagtgaatttaacataccattagcatcttaccgatcactactttct
ctgaagccagaagatgcagactatcagatgtgtgaaggaattgactttgaagaaattata
aaacaagatggtacttctttcaagaaaaaatgtagacctataaacccttccaggaagcca
tttatcattaatatagtcccagaaaaagataatttgacatatatgtcagtgtattcagaa
gaccgttgggacttaccatatataatacatttgtggccacctattctactccgaaatctt
cttccttacaaaattgcttattacatagaggggattgaacatagagtttttactctccat
gaaggccgttcagcccagctttgtactgtacagttggataaagccaggctacatttaaaa
ttacttgactatcttaatcatgattggaaaagtgaatatcatataaaacctaatcaacaa
gatattagtttcatcagttttacttgtgttacagaaatagaaaagactgatttagatatt
gctgtccatgtgacttataatactggccagactattatggcatttcatagtccttattgg
atggttaataaaactggtcgaatgttacagtataaagcagatggaattcatcgaaagcat
ccacctaattataaaaagccagttctcttttcatttcagccaaagcactttttcaataac
aataaggttcagcttatggtaactgatagtgaattgtcagatcaattttcaattgataca
gttggtagtcatggagcggttaaatgtaaaggcccaaaaatggaatatcaagttggtgtc
actatagaccttagcagttttaatattaccagaattgtcacatttacccccttttttttg
attaaaaacaaaagcaaatatcatatatcagtggctgaagagggaaatgataaatggctc
gctcttgatttggagcagtgtgtccccttttggcctgaggacgcttctaataaacttctt
attcgagttgaaagaagtgaaagccctccccataagatacattttaataaggaagaaagt
tgtattttactgcgtctagacaatgagcttggaggtattatagcagaagttaatttggct
gagcattctacagttattacattttcagattatcgtgatggagccgctacatttctgtta
ataaatcacaccaagaatgacattgttcagtataagcaaagttccctcagtgaaatagaa
gattccctccctcctggaaaagcagtattttatacatgggctgatccagtgggctctaga
aagctgcagtggaaatgtggaaaaagccacggtgaagtaacacaaaaggatgatatgatg
acacctataaatttggggaaaacgaccatttatttagtttcattttttgaaggcttacaa
cgcataattttattcactgaagatccaagagtatttaaagtgacatatgaaagtgagaaa
gcagagttagcagagcaagaaattgtgttggcgttacaagatgttgggatttctcttgtc
aacaattatacaaagcaagaagtagcctatattggcattacaagttctgatgtggtttgg
gagacaaagcccaggaagaaggcaagatggaagccaatgagtgtaaagcacactgagaag
ttagagaaggaatttaaggaatatgttgaatcttcaccgtcagaagataaggttattgag
ttggacaccaacattctggttcgcttcacacctggtgcttctaacatgaaaattctgcag
ccacatgtaatagctataagaagaaattatcttccagcattaaaagtagaatatagcaca
tctgcacatcagtcatcgtttagaattcaaatttatagaatacagatccaaaaccaaata
catggtgctatatttccattcgtgttttatcccattaaaccgcccaagtccgtcaccttg
gattcagcaccgaaaccctttactgatgtcagtattgtcatgagatctgcaggacattcg
cagatatcacgtattaagtatttcaaagtgttgatccaagaaatggatctcaggttagat
cttggatttgtctatgctgtatcagaacttatgacaccagctgaagtcactgaaaaaaca
gaggttgagctttttcataaagacatagaagctttccaagaagaatataaaatagtctca
ttagtagattcatcacaagtcagtctctatgaatactttcatatatctcctatcaagttg
catttaagtgtttcactgagttcaggtggtgaagaaccgaaagattcagaacagcatgaa
ggactgatggcaattcgttctttacatcttttgctgaagagtattggtgccactctcaca
gatgtacaagatgtagtttttaagctagcattttttgaactcaattatcagttccataca
acagctgaactacagtctgaagtaataagacactattcaaagcaggccattaaacagatg
tacgtactcattcttggacttgatgttttgggaaatccctttggcttgataagagaattt
tctgaaggtgtagaagcatttttttatgaaccttaccagggagccatccagggtcctgaa
gagtttgtggaaggaatggcactaggactgaaagcactagttggtggagctgttggtgga
ctagctggtgctgcctccaaaatcaccagtgctatggctaaaggggtggcagctatgact
atggatgaagactaccaacagaagagaagagaagccatgaataagcaaccagctggtctt
agggaaggcatcactcgtggaggaaaaggcctagtttctggttttgtaagtggcataaca
ggaattgttacaaaaccaatcaaaggagctcagaaagaaggagcaactggtttctttaaa
ggtgttgggaaaggtttagttggagcagtgacaaggccaactggaggcatcatagacatg
gctagcagtacatttcagggaataaaaagagctacagagacctctgatgaagtggagagt
ctgcgaccccctagattctttaatgaagatggagttatcagaccttacagattgagggat
ggtactggaaatcaaatgttacaggtcatggaaaacggaagatttgcaaaatacaaatat
tttacccatgtcatgatcaataagacagacatgttaatgattaccagaagtggtgtgttg
tttgtaacaaaaggaacatttggacagcttacttgtgagtggcagtatagttttgatgag
tttaccaaagagccattcattgttcatgagagaagactacgcatcgaagcaaaggaacgg
gtgaagtctgtattccatgccaaagagtttggaaaaatagttaacttcagaaccccggag
gatgcgaggtggatcctcagaaagctagaagaagcaagagaaccttccccgaacctctga
DBGET
integrated database retrieval system
