Bos indicus (zebu cattle): 109565428 Help Entry 109565428         CDS       T04792                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism biu  Bos indicus (zebu cattle) Pathway biu05014   Amyotrophic lateral sclerosis biu05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:biu00001]  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     109565428 (SPG11)    05022 Pathways of neurodegeneration - multiple diseases     109565428 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:biu03400]     109565428 (SPG11) DNA repair and recombination proteins [BR:biu03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      109565428 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  109565428 NCBI-ProteinID:  XP_019824960 UniProt:  A0A6P5CGZ8 LinkDB All DBs Position 10:complement(105912314..105989250) Genome browser AA seq 2428 aa AA seqDB search MAAEQGALPVLLVPVPAEAVGRLGSRAQLHREQAALGSLTAAGSLHVLPLAPGGRGGGDC RLEGCFRQFVWEDSHHSGTPNNKPRLLALTENYELLICEFNLEHGRCDATILYSYSEETL QKLVEDQNISISLLSLRILSFHNNTSLLFINKCVVLHVMFPERDAEIRVLSCCTLPLPAQ AVDRIIDTQLCRGILFILSSLGWIYIFDIVDGKQVAHVDLALAQEDMCNEQQQESAKSSS FTSLKVSQDLDVVVVVGFSNTAVALNLTLYFRQYPGHLLCEKTLQDSPIEGPKGIDEDDP VNSDYNMKLTKFSFRIDRSWKAQLSSLNETIKSSKLGGSCCAPWFQDISHLESPESGNRS TSVSDWAFIPQDVTCSPCNFPQKGPARTSDPGRVWKRMHIREQEEPLELTCVSVTGFTAL FTWAGESTGWTIVLWDLETQSTQCFSLGKKCIPVDSGGVQQLCLVLTESGLSLILFGLTQ EEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLTP SSKSSVPDQFDHFASHLYLKHVEELTPALDLLCSAIRENDSETQSKHFSEQLLNLTLSFL NKQIKELFIHIEELDEHLQKGVDILTSYIDELRTFMIKFPWKLTDAIDEYDVNENVPKVK ESNIWEKLSVEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIRIGLDLVFDSLKKNNM EEASELLKNMGFNVKDQLLKICFYTADKSVRDFLVEIFKEKNYFSEKEKRTVDFVHQVEK FYSGHLQENIQIQSLPRYWIKEQDFSKHKSVLDSFLKYDHKDKLNKQDHRIVLNWAQWWN QPTQESILLPWINPEGYNSYSPEGLWRYLTARHDWPSIILWIGEFQTQSSYASLEQNKWP PLTVDVVDQNTCCNNYMRNEILDKLARNGIFLTSELEDFELFLVRLNRVGGVMQDALAVQ NYRSKEGWDFHSHFILYCLEHSLQYLLYVYLDHYKLSPPNCPFLGKKELHEAHPWFEFLV QCRQVSSNLTDPRLIFQASLANAQILIPSNQASVSSMLLEGHTLLALATTMYAPGGVSQV VQNGENENSLKKVDPQLLKMALTPYPKLKAALFPQYTAPSVLPPDITLYHLIQSLLPFDP SRLFGWQSANTLAIGDAASQLPHFSSPDLVNKYAVVERLNFAYYLHHGRPSFAFGTFLVQ ELTKSKTPKQLIQQVGHEAYVLGLSCFHISSIGAACVCFLELLGLDSLKLRVDMKVANII LNYKCGNEDAPYNSIRESLTEKLSKLALGERATIEELLVLLEEGIWSNIQQQQIQRLSSE SSSQWALVVQFCRLHNIKPSTSYLRECARANDWLQFIIHSQLHNHHPEEVKYLLQYFSPV LQDHLRLAFENLPSVSNSRMDSDQVCNRSSQELQRHKEEMTDFFQILLQCSEVPDSWCWL LGEAVRQKAPILSVLASCLQDASALSCLCVWIIASVEPHVAAEAVGPLQDSAEGHVWGLE DLSVIWRTLLTRQKIRTLIRGFQLFFKDSPLLLMMEMYELCMFFKNYKEAEAKLVEFQQS LETLETAATRVPAAIPAPWLKEHVCFLLKLMLQQCSTQYELGRLLQLFVGIEHLFSDGPD VKKLCVLSQILKDTPIAINRAIITSYSLENFQRECRSVLEKLETDGHFALARRVAELAEL PVDDLVIEEITQEMQTLKHIDQWSLKQARIDFWKKCHENFKKNSVSSRAASSFFSAQALW AGECPAAGGPSSAEERHLLLTLAGHWLAREDPVPLEDLEGLEKQIWLCRVAQHTLRGSQE EGGPRAPQQASAGGELSFDGLASEFSFSNLAVLNTSKYLELTGFPSRDICDNELNWKEQA SLNCLIGRLLDDGCVHEASRACRYFRFYHQDVALVLHCRALXSGEASVDDLHPEILALLR STELPEEEEEAGIPLRKVQSTSSLDSWSLVMLPPADEVVTNLETLTSKCLRGKNYCRQVL CLYELAKELGCSYADVAAQDGEAVLRAILASQQPNRCKRAQAFISTQGLRPDTVAELVAE EVTRELLTPSEGTGHRQVFAPAEESQTFLQLTALCQDRTLVGMKLLEKISSVPHGELSCT TELLILAHHCFTLTCHMEGIMRVLQAARLLTDNHLAPSEEYGLVVRLLTGIGRYNEMTYI FDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENH EAAACIQLKLIESQPWEDCVKDGQRLKQLLLKALTLMLDAAESYAKDSCVRQALHCHRLT KLITLQIHFLNTGQNTMLINLSRHRLMDCIMALPRFYQASIVAEAYDFVPDWAEILYQQV ILKGDFNYLEEFKQQRLLRPSVFEEISIKCKHHQPTEFVLKNLKKLLTYCEDIYLYYKLA YEHKLYDVVNVLLKDPQTGCCLKDMLAX NT seq 7287 nt NT seq  +upstreamnt  +downstreamnt atggctgcggagcagggcgcgctgcccgttttgttggtgccggtccccgccgaggccgta gggcgactggggtctcgggcgcagctgcacagagagcaggcggccctggggagtctgacg gccgcaggcagccttcacgtacttcccttggcgccgggcggccgaggcgggggcgactgc cgcctggaaggctgttttcggcagtttgtgtgggaggattctcatcacagcgggacacca aacaacaagcccagactgcttgctcttactgaaaattatgaactgctcatctgtgaattt aatttggaacatggaagatgtgatgcaaccattttatatagctatagtgaagagacattg cagaagcttgttgaagatcaaaatatcagtatttccttattatctttgaggattctgtca tttcacaacaacacatcattattgttcatcaacaaatgtgttgtcctacatgttatgttt cctgaaagagatgctgagattagggtactcagctgttgcacattacccttacctgcgcag gcagtggacaggattattgacacgcagctctgcagaggaattctctttattttgagtagt ttaggctggatctacatttttgacattgtggatggtaaacaagtagctcatgtggattta gcacttgctcaagaagatatgtgtaatgagcagcaacaggagtcagccaagagttcttca tttacttcactgaaagtgtctcaggacctggatgttgtagtggtcgtgggcttctccaat actgcagtcgctcttaacttgactttgtacttcaggcaatatccaggacatctgttatgt gaaaaaactctacaagacagccctattgaaggtcccaaggggatagatgaagatgatcct gttaattctgactacaacatgaaactgaccaagttttccttccgaattgataggtcttgg aaagcccagctgtcatcattgaatgaaacaataaagagctccaagctgggaggttcctgc tgtgctccgtggttccaggatatttcgcatctggagtcccctgaatctggtaaccgcagt accagtgtgtcagactgggccttcattccacaggatgtgacatgtagcccatgtaatttt ccacagaaaggccctgccaggaccagtgatccaggaagagtgtggaaaaggatgcacatc agggaacaggaggagccccttgagcttacttgtgtgtctgtgacaggcttcactgcactg tttacttgggcaggggaaagcacaggctggaccattgtcctgtgggacttggaaacccag agcacgcagtgtttttcactgggcaaaaaatgtattcctgtagacagtggtggagtccag cagctgtgcctcgtcttgacagaaagtggactctctctgattttgtttggtttgactcaa gaggaatttttaaataggctgatgatccacggaagtgccagtactgtggactctctttgt catctcaatggttgggggcggtgttccatccccatacatgcactagaggcaggaatagaa aatcgtcagctggacacagtagatttctttttaaagagcaaagaaaatcttttgactcca tcctcaaaatcttctgtacctgatcagtttgatcactttgcatcccatttatatttaaaa catgtggaagagctgacaccagcattggatttactttgctcagcaattagagaaaatgat tctgagacccaaagcaaacacttttcagaacagttacttaaccttacactatcttttctt aacaaacaaataaaggagctttttattcacattgaagagctagatgaacatctacagaaa ggagtggacattttgaccagctacattgatgaacttcgaaccttcatgataaagtttccc tggaagctaacagatgctatagatgaatatgatgtaaatgaaaatgtccccaaagtaaag gagagcaatatatgggagaaactcagtgttgaggaagttattgccaatgccattttaaac aacaaaataccagaggcacaaactttcttcaggattaacagtcattctgctcaaagactt gaggagttgattagaataggcctagatttggtctttgacagtttgaaaaagaacaacatg gaggaagcctctgagcttttgaagaatatgggctttaatgtaaaagaccagttgctcaag atatgcttctatacagctgataaaagcgtacgggactttctggttgaaatttttaaagaa aaaaattatttttctgaaaaagagaaaaggactgtagactttgtgcatcaagttgagaag ttttattcaggacatttacaagaaaatatacagatccagtctttacccaggtattggata aaggaacaagatttttccaagcacaagtctgttttggactcattcctaaaatatgatcat aaagataaacttaacaagcaagatcataggattgtgttaaattgggctcagtggtggaat cagccaacacaagaatccatccttctcccctggataaatccagaaggatataactcgtat tctcctgaaggcctctggagatacctcacagcacgccatgattggcccagcattatcctg tggattggagaatttcagacccagagtagttatgcttcacttgagcagaataaatggcca cctctgactgttgatgttgttgatcagaatacttgttgcaacaactacatgagaaatgaa attttagataagctggccaggaatggaatttttcttacatctgagttagaagactttgaa ctcttccttgtcagactaaaccgtgttgggggtgtcatgcaggatgccctcgctgttcag aactataggtccaaagaaggatgggatttccactctcacttcattctctattgtttggaa cacagtctacagtatcttctttatgtctatcttgaccattacaaacttagtcctccaaat tgtccttttttgggaaaaaaagaattacatgaagctcacccttggtttgaatttttagtt cagtgtcgacaagtttccagtaatttaacagatcccagactgatcttccaggctagcctt gcaaatgctcagatactgattcccagcaaccaggccagtgtcagcagtatgctattggaa ggacataccctcctagcccttgctaccacaatgtatgcccctgggggcgtcagccaggtt gttcagaatggagaaaatgagaactctctgaagaaagtagatccccagctactgaagatg gcattaactccttacccaaagcttaaagctgctctgttcccacagtacaccgcccctagt gtcctgcctcccgacattacactctaccacctcattcagtcattgttgccctttgatcct agcagattgtttggctggcagtctgccaacacattggctataggagatgcagcgagtcag ctcccacatttctctagccctgacctggttaataaatacgctgtagtagaacgtctgaat tttgcttattatttacatcatgggcggccatcatttgcatttggtacttttctggttcag gaattaaccaagagcaagacccccaagcagctgatccagcaagtcggccatgaagcctat gttttagggctctcctgtttccacatatcttcgataggagccgcctgtgtatgcttctta gaattgcttggtctcgacagcctcaagctcagagttgatatgaaagtggccaatataatt ttgaactacaagtgtggaaatgaagatgctccatacaactctatcagagagtctctaact gaaaaactgtctaaacttgctctgggtgaaagggcaaccatcgaagagttacttgttctc ttagaagaaggcatatggagcaacattcagcagcagcaaatacagaggttatccagtgaa tccagcagccagtgggcattagtggtacagttctgcaggctccacaatataaaaccgagc acatcttaccttagagaatgtgccagagcaaatgactggttacagtttattattcatagc cagctccataatcaccatccagaggaggtgaaatatcttctccagtatttcagccctgtt cttcaggaccacttaagactggcttttgagaacttgccctcagtgtccaactccagaatg gacagtgaccaagtctgcaacaggtcctcacaggaactccagagacacaaagaagagatg acagatttctttcagattctgcttcagtgttcagaggtgccagactcctggtgctggctc ctgggagaagcagtgagacaaaaggccccaatcctcagtgtcctggcctcatgtctccag gatgccagtgctctctcttgtctctgtgtctggatcatcgcctctgtggagccccacgtt gcagctgaagcagtgggaccccttcaggactcagcggagggccacgtctggggcctggag gacctctccgtcatctggaggacattgctaacaaggcagaagatcaggactctcatcaga ggtttccagcttttctttaaggattccccactcctgttgatgatggagatgtatgaactc tgtatgttcttcaagaattataaggaggctgaagctaaacttgtggagttccagcagagc cttgaaactcttgagacagcagccacaagggtccccgctgccatccctgcgccatggctg aaggaacacgtgtgttttcttttgaagctcatgctgcagcagtgtagcacccagtatgag ctggggaggctcttacagctgtttgttggaatagagcatctcttctctgatggtccagat gtgaagaagctgtgtgtccttagtcagattttgaaggatacacccatagccattaatcgt gcaatcattactagctacagccttgagaattttcagcgtgaatgtaggtcagttttggaa aaactggagacagacggacactttgctttggccaggagggtagcagaactagctgagtta cctgtggacgacttggtaattgaagagataacacaggaaatgcagaccttaaagcacatt gaccagtggtccctgaaacaagcacgaattgacttctggaaaaaatgtcatgagaatttt aagaaaaattccgtttccagcagagcagcttcttcttttttctcagcccaggccctgtgg gcaggtgagtgccccgctgcagggggtcccagcagcgccgaggagcgccacctgctgctc acgctggcagggcactggctcgcccgggaggaccctgtgcctttggaggacctggagggc ctggagaagcagatctggctctgccgtgtcgcccagcacaccctcagggggagccaggag gaaggagggcccagagcgcctcagcaggcctcagctggaggtgaactttcctttgatggc ttagccagtgagttttcattctctaacttggctgttctgaacacatcaaaatacttagaa cttactggctttccatccagagatatttgtgacaatgaactgaactggaaggagcaggca tcccttaactgtttgatcgggcgcctgctggatgacggctgtgtgcacgaagcaagccga gcgtgccggtattttcgtttctatcaccaagacgtcgccttggtgttgcactgcagagct ctrrcttcaggggaggctagtgtggacgacctgcacccggagatcctcgcgctcttacga agtactgagcttcctgaggaagaagaggaagctggtatccccctaaggaaagtccagagc acttccagtctggacagttggtcgttagtgatgctgccccccgcggacgaagtggtgacg aacctggaaactctgacaagcaagtgcctccgcgggaagaactactgccggcaggtcctc tgtctctatgagctcgccaaggagctgggctgttcctacgcagacgtcgctgcccaggat ggtgaggccgtgctccgggccatcttggcttctcagcagcctaatcgatgcaagcgagct caagccttcatcagcacccagggcctcaggccagacacagtggctgaacttgtggctgaa gaggtgacccgggagctgctgacaccgtcggagggaacaggacacaggcaggtgttcgcc ccagcagaggagagccagacgtttcttcagctgactgctttgtgtcaagaccgcaccttg gtgggcatgaagctgttggagaagatttcctctgttccgcacggggagctgtcttgcacc acagagctgctgatcctggctcatcactgcttcacactgacatgccacatggagggcatc atgcgtgtcctgcaggccgcccggctgctcaccgacaaccacttggcccccagtgaggag tacgggctggtggtgcgcctcctcactggcatcggaaggtacaatgagatgacatacata tttgatttgctgcataaaaagcactactttgaagtgctcatgaggaagaagctggaccct agtggcaccctgaagacggccctgctggactacatcaagcgctgccgccctggggacagc gagaagcacaacatgatcgcgctgtgcttcagcatgtgccgcgagatcggcgaaaaccac gaggcagcygcctgcatccaactgaaactgatcgagtctcagccctgggaggactgtgtc aaggatgggcagcgactgaagcagctgctgctgaaggccctgactctgatgctggacgca gcagagagttatgccaaggactcctgcgtgcgccaggccctgcactgtcaccggctcacc aagttgataacgctgcagattcactttctgaacactggccaaaacacgatgctcatcaac ctgagccgccacaggctgatggactgtatcatggcgctgcctcggttctaccaggcttcc attgtggcagaggcctatgactttgttcctgactgggctgaaattctctatcaacaagtg attcttaaaggagactttaattacttggaagaatttaagcagcaaaggttattaagaccc agtgtatttgaagagatttcaataaaatgtaaacatcatcagcctacagaatttgttctg aaaaacctgaagaagttactcacatattgtgaagacatctacttgtattacaagctggca tacgaacacaaactttacgatgttgtaaatgtgcttctgaaggaccctcagaccggctgc tgtctaaaggacatgctggccrgttag

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