Bos indicus (zebu cattle): 109566059
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Entry
109566059 CDS
T04792
Symbol
MSH2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu01524
Platinum drug resistance
biu03430
Mismatch repair
biu05200
Pathways in cancer
biu05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109566059 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
109566059 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
109566059 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
109566059 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
biu03400
]
109566059 (MSH2)
DNA repair and recombination proteins [BR:
biu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109566059 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
109566059
NCBI-ProteinID:
XP_019825674
UniProt:
A0A6P5CKB2
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Position
11:30938110..31018103
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AA seq
934 aa
AA seq
DB search
MAVQPKDTLQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKT
QGVVKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYWH
FKASPGNLSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSTQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVMPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALFLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSDAAPVPYVRPVILEKGRGRITLKASRHACVEVQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGKPQECDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EESITRKLKQLKAEVIAKNNSFVNEIISRIKVTA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggacaccctgcagctggatagcgcggccgaggtcggctttgtg
cgcttcttccaaggcatgccggagaagccgaccaccacagtgcgcctttttgaccggggt
gacttctacaccgcgcaccgggaggacgcactgctggccgcccgcgaagtgttcaagacc
cagggggtggtcaagtatatggggccggcaggagcaaagactctggagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaacagagctggaaataaggcctccaaggagaatgattggtattggcat
tttaaggcctctccaggtaatctttctcagtttgaagatattctctttggtaacaacgat
atgtctgcttccattggtgttgtgggtgttaaaatgtctacagtcgatggtcaaagacag
gtcggagttgggtatgttgactccacacagaggaagctgggactgtgtgagttccctgat
aatgatcagttctccaatctggaggctctcctgattcagattggaccaaaggagtgtgtt
atgccaggaggggagactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattttgatcacagaaagaaaaagagctgacttttccacaaaagatatttatcaagac
ctcaaccggttgytgaaaggcaagaagggagaacaggtgaatagtgctgtgttgccagaa
atggagaaccaggttgcagtttcttccttgtctgcagtaatcaaatttttagaactctta
tcagatgactcaaactttggacagtttgaactgactacttttgacttcagccagtacatg
aaattggatattgcagcagtgagagcccttaaccttttccagggttctgttgaagatact
tctggytctcagtctctggctgcattgctcaataaatgcaaaactcctcaaggacaaaga
ctggttaaccagtggattaagcagcctcttatggacaagaacagaatagaagagagatta
aatttggtagaagcttttgtagaagatgcagaattgaggcagaatttacaagaagattta
cttcgtcgatttccagatcttaaccgacttgccaagaaatttcaaagacaagcggcaaat
ttacaagattgttaccgactctatcagggtataaatcaactccctaatgttattcaggct
ttggaaaaatatgaaggaaaacatcaggcattgtttctggcagtttttgtgactcctctt
attgatcttcgttctgacttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgaattccttgtaaaaccttcatttgatcctaacttgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattagtaagtgcagct
agagatctaggcttagatcctggcaarcagattaaactggattccagcacacagtttggc
tattatttccgagtaacatgcaaggaagaaaaagtccttcgtaataataaaaatttcagt
acagtagatatccagaagaatggtgttaaatttacaaacagtaaactgacttctctcaat
gaagagtacaccaaaaataaaactgaatatgaggaagcccagaatgccattgttaaagaa
attgtcaatatttcttcaggctacgtagaaccgatgcagacrctcaacgatgtgttagct
cagctggatgctgttgtcagctttgctcacgtgtccgatgcagcacctgttccatatgta
cggccggtsattttggaaaaaggacgaggcagaattacactgaaagcttccagacatgct
tgtgtggaagttcaagatgaagtcgcatttattcctaatgatgttcactttgaaaaagat
aaacagatgttccacatcattactggtcccaatatgggagggaaatcaacatatattcgc
cagactggggtggtagttctcatggcccagatcgggtgttttgtgccatgtgagtgggca
gaagtgtccattgtggactgcatcttggcccgggtaggggctggtgacagtcagttgaaa
ggagtctccacatttatggctgaaatgttagaaactgcttctattctcaggtctgcaacc
aaagattccttaataatcatagatgagytgggaagaggaacctctacctatgatggrttt
ggattagcgtgggctatatcagagtacattgcaacaaagatcggkgctttttgcatgttt
gcaacccattttcatgaacttacagccttggccaatcagataccaactgttaataatcta
catgtcacagcactgactactgaggagactttaactatgctttatcaggtgaagaaaggt
gtctgtgatcaaagttttgggattcatgttgctgagcttgctaattttccaaggcatgta
atagagtgtgctaaacagaaagccctggagttggaggagtttcagaatattgggaaacca
caggaatgtgatgaaatggaaccagcagcaaagagatgctatctggaaagagagcaaggt
gaaaaaattattcaagagtttctatccaaggtaaagcaagtgccctttactgaaatgtca
gaagaaagcatcacaagaaagttaaaacagctaaaagctgaggtgatcgcaaagaataat
agttttgtaaatgaaatcatttcccgaataaaggtaactgcgtga
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