Bos indicus (zebu cattle): 109567146
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Entry
109567146 CDS
T04792
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
biu
Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
biu03000
]
109567146 (SOX1)
Transcription factors [BR:
biu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109567146 (SOX1)
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
109567146
NCBI-ProteinID:
XP_019827446
UniProt:
A0A6P5CMY7
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Position
12:84267967..84269076
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AA seq
369 aa
AA seq
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MYSMMMETDLHSPGGAQAPTNLSGPXXXGGGGGGGGGGXKANQDRVKRPMNAFMVWSRGQ
RRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAXHMKEHPDYKYRPRRK
TKTLLKKDKYSLAGGLLAAGAGGGAAVAVGVGAAAVGQRLESPGGAAGGGYAHVNGWANG
AYPGSVAAAAEAXXXXXXXXXAYGQHPGAGGAHPHAHPAHPHAHHPHAHPHNPQPMHRYD
MGALQYSPISNSQGYMSASPSGYGGLPYGAAGGAHQNSAVAAAAAAAAASSGAXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAAQSRLHSLPPHYQGAGAGA
NGTVPLTHI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcattcgcccggcggcgcccaggcgcccacg
aacctgtcgggcccgnnnnnnncgggcgggggcggcggcggcggcggcgggggcyccaag
gccaaccaggaccgagtcaagcggcccatgaatgccttcatggtgtggtcccgcggtcag
cggcgcaagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctg
ggcgccgagtggaaggtcatgtccgaggccgagaagcggccgttcatcgacgaggccaag
cggctgcgcgcgstgcacatgaaggagcacccggattacaagtaccggccgcgscgcaag
accaagacgctgctcaagaaggacaagtactcgctggccggcgggctgctggcggccggt
gcgggcggcggcgcggccgtggccgtgggcgtgggcgcggcggccgtgggccagcggctc
gagagcccgggaggcgcggcgggaggcggctacgcgcacgtcaacggatgggccaacggc
gcctaccccggctcggtggcggcggcggcggaagcannnnnnnnnnnnnnnnnnnnnnnn
nnngcctacgggcagcacccgggcgcgggcggcgcgcacccgcacgcgcaccccgcgcac
ccgcacgcgcaccacccgcacgcgcacccgcacaacccgcagcccatgcaccgctacgac
atgggcgcgctgcagtacagcccgatctccaactcgcagggctacatgagcgcctcgccc
tcgggctacggcggcctcccctacggcgccgcgggcggcgcgcaccagaactcagccgtg
gcggcggcggcggcagcggcggccgcgtcgtcgggcgccnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccggcg
gcggcgcagagccggctgcactcgctgccgccgcactaccagggcgcgggcgcgggcgcc
aacggcacggtgcccctgacgcacatctag
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