KEGG   Bos indicus (zebu cattle): 109567297
Entry
109567297         CDS       T04792                                 
Symbol
VAPB
Name
(RefSeq) vesicle-associated membrane protein-associated protein B/C isoform X1
  KO
K10707  vesicle-associated membrane protein-associated protein B
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu04979  Cholesterol metabolism
biu05014  Amyotrophic lateral sclerosis
biu05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:biu00001]
 09150 Organismal Systems
  09154 Digestive system
   04979 Cholesterol metabolism
    109567297 (VAPB)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    109567297 (VAPB)
   05022 Pathways of neurodegeneration - multiple diseases
    109567297 (VAPB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:biu04131]
    109567297 (VAPB)
Membrane trafficking [BR:biu04131]
 Autophagy
  ER-phagy
   Other ER-phagy associated proteins
    109567297 (VAPB)
  Other autophagy associated proteins
   ER-mitochondria tethering complex
    109567297 (VAPB)
SSDB
Motif
Pfam: Motile_Sperm ZapB Ig_CFAP65_4th Com_YlbF LcrG ATP-synt_G bZIP_1 GIT_CC GAT
Other DBs
NCBI-GeneID: 109567297
NCBI-ProteinID: XP_019827689
UniProt: A0A6P5CR19
LinkDB
Position
13:complement(58692656..58740097)
AA seq 245 aa
MPPSRGFQFGCRRVKGKAYGKGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNS
GIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSK
LRCVFELPAENDKPHDVEINKIIPTTASKTETPTVSKALSSSLDDTEVKKVMEECKRLQS
EVQRLREENKQFKEEDGLRMRKTAQSNSPAPASAMAGKEEGLSTRLLALVVLFFIVGVII
GKIAL
NT seq 738 nt   +upstreamnt  +downstreamnt
atgcccccctctcgtggcttccagtttggctgccggagggtcaaaggcaaggcttatggg
aaaggtcctttcaccgatgttgtcaccaccaacctgaagcttggcaacccgacagatcga
aatgtgtgttttaaagtgaagaccacggcaccacgtaggtactgcgtgaggcccaacagt
gggatcattgatgcaggggcctcgattaacgtatctgtgatgttacagcctttcgattat
gatcccaatgagaaaagtaaacacaagtttatggttcagtctatgtttgctccaactgac
acttctgatatggaagcagtatggaaggaggcaaaaccggaagaccttatggattcaaaa
cttagatgtgtgtttgaattgccagcagaaaatgataaaccacatgatgtagaaataaat
aaaattatacccacaactgcatcaaagacagaaacaccaacggtgtctaaagctctgagt
tcctccttggatgacactgaagttaagaaggtgatggaagagtgtaagaggctgcagagc
gaagtccagaggcttcgggaggagaacaagcagttcaaggaggaagacggccttcggatg
aggaagacagcacagagcaacagccccgctcccgcgtcagccatggctgggaaggaggag
ggcctgagcacccggctgctggcgcttgtcgtcctcttcttcatcgttggcgtgatcata
gggaagatcgccttgtag

KEGG   Bos indicus (zebu cattle): 109576737
Entry
109576737         CDS       T04792                                 
Name
(RefSeq) LOW QUALITY PROTEIN: vesicle-associated membrane protein-associated protein B-like
  KO
K10707  vesicle-associated membrane protein-associated protein B
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu04979  Cholesterol metabolism
biu05014  Amyotrophic lateral sclerosis
biu05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:biu00001]
 09150 Organismal Systems
  09154 Digestive system
   04979 Cholesterol metabolism
    109576737
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    109576737
   05022 Pathways of neurodegeneration - multiple diseases
    109576737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:biu04131]
    109576737
Membrane trafficking [BR:biu04131]
 Autophagy
  ER-phagy
   Other ER-phagy associated proteins
    109576737
  Other autophagy associated proteins
   ER-mitochondria tethering complex
    109576737
SSDB
Motif
Pfam: Motile_Sperm Ig_CFAP65_4th Cep192_D3 Cep192_D6 GAT
Other DBs
NCBI-GeneID: 109576737
NCBI-ProteinID: XP_019840930
UniProt: A0A6P5DV26
LinkDB
Position
23:32685743..32686501
AA seq 243 aa
MAKVGQVLSLEPQHELKFRGPFTDAVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPIDTSDMEAVWKEAKPEDLMDSKLR
CVFELPAENDKPYDVEINKIIPTTASKTETPKVSKALSSSLDDTEVKKVMEDCKRLQSEV
QRLWEEDKQFKEEDGLXMRKTVQSHSPRSASATAGKEEGLSTGLLALGVLFFIVGVIIGK
TVL
NT seq 732 nt   +upstreamnt  +downstreamnt
atggcgaaggtggggcaggtcctgagcctcgagccgcagcacgagctcaaattccgaggt
cccttcaccgatgctgtcaccaccaacctgaagcttggcaacccgacagatcgaaatgtg
tgttttaaagtgaagaccacggcaccacgtaggtactgcgtgaggcccaacagcgggatc
attgatgcaggggcctcgattaacgtatctgtgatgttacagcctttcgattatgatccc
aatgagaaaagtaaacacaagtttatggttcagtctatgtttgctccaattgacacttct
gatatggaagcagtatggaaggaggcaaaaccggaagaccttatggattcaaaacttaga
tgtgtgtttgaattgccagcagaaaatgataaaccatatgatgtagaaataaataaaatt
atacccacaactgcatcaaagacagaaacaccaaaggtgtctaaagctctgagttcctcc
ttggatgacactgaagttaagaaggtgatggaagactgtaagaggctgcagagcgaagtc
cagaggctgtgggaggaggacaagcagttcaaggaggaagacggacttckgatgaggaag
acagtgcagagccacagtccccgctccgcgtcagccacggctgggaaggaggagggcctg
agcaccgggctgctggcgctcggcgtcctcttcttcatcgttggcgtgatcatagggaag
accgtcttgtag

KEGG   Bos indicus (zebu cattle): 109577790
Entry
109577790         CDS       T04792                                 
Symbol
VAPA
Name
(RefSeq) vesicle-associated membrane protein-associated protein A
  KO
K06096  vesicle-associated membrane protein-associated protein A
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu04979  Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:biu00001]
 09150 Organismal Systems
  09154 Digestive system
   04979 Cholesterol metabolism
    109577790 (VAPA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:biu04131]
    109577790 (VAPA)
Membrane trafficking [BR:biu04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Others
   Others
    109577790 (VAPA)
 Autophagy
  ER-phagy
   Other ER-phagy associated proteins
    109577790 (VAPA)
SSDB
Motif
Pfam: Motile_Sperm Ig_CFAP65_4th Cep192_D6 Cep192_D3 ASH HYDIN_VesB_CFA65-like_Ig ZapB bZIP_1 YabA Ig-like_IP5PC_F
Other DBs
NCBI-GeneID: 109577790
NCBI-ProteinID: XP_019842184
UniProt: A0A6P5DW61
LinkDB
Position
24:43484289..43522588
AA seq 294 aa
MASASGTMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
VRPNSGIIDPGLTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE
LMDSKLRCVFEMPNENDKLGLAPPGPAVAVAPLSSINSTGTAPTTYSAKNEPRAFSVFKQ
EKQKNDMEPSKAVPLNAAKQDGPVPKPHSVSLSDTETRKLVEECKRLQGEMMKLSEENRL
LRDEGLRLRKVAHSEKPGSTSAVSFRENVTSPLPSLLVVIAAIFIGFFLGKFIL
NT seq 885 nt   +upstreamnt  +downstreamnt
atggcgtccgcctccgggaccatggcgaagcacgagcagatcctagtcctcgacccgccc
acagacctcaaattcaaaggccccttcacagatgtagtcactacaaaccttaagttgcga
aatccttcagatcgaaaagtgtgtttcaaagtgaagacgacagcgcctcgtcggtactgt
gtgcggcccaacagtgggatcattgaccccggcttgactgtgaccgtttcagtaatgctg
cagccttttgactatgaccccaatgagaagagtaaacacaagttcatggtacagaccatc
tttgctccaccaaacatttcagacatggaagctgtgtggaaagaagcgaaacccgatgaa
ttaatggattctaaattgagatgtgtatttgaaatgcccaatgaaaatgataaattgggt
ctcgctcctccagggcccgccgtggccgtcgctccgctgagcagcatcaacagcacaggc
acagcacctaccacttatagtgcgaagaatgagcccagggccttcagtgtgttcaaacag
gagaagcagaagaacgacatggaacccagcaaagccgttcccctgaacgctgcgaagcag
gacgggcccgtgccaaagccgcacagcgtttccctcagtgacaccgagacgaggaagctc
gtggaggagtgcaagcggctgcagggggagatgatgaagctgtcggaagagaaccggctc
ctgagggatgaaggcttacggctcaggaaggtagcacattcggaaaaacctggatccacc
tcagctgtgtccttcagagagaacgtcaccagtcctcttccttcacttcttgttgtcatt
gcagccattttcattggattctttctagggaaattcatcttgtag

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