Bos indicus (zebu cattle): 109567705
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Entry
109567705 CDS
T04792
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03015
mRNA surveillance pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109567705 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
109567705 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109567705 (PABPC1L)
03041 Spliceosome [BR:
biu03041
]
109567705 (PABPC1L)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109567705 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
109567705 (PABPC1L)
Spliceosome [BR:
biu03041
]
Complex C
Other components
Complex C specific factors
109567705 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
SET_assoc
RRM_5
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
109567705
NCBI-ProteinID:
XP_019828294
UniProt:
A0A6P5CSQ9
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All DBs
Position
13:74099535..74126465
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AA seq
638 aa
AA seq
DB search
MGIKTQVSCRRVPPSPRRWRRPGALPGASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAG
PILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRK
SGVGNIFIKNLEDSIDNKAXYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAI
STMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFG
KMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNE
LKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGF
GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALGGP
ILGSFQQPASYFLPAVPQPPAQAPYYGSGPPIQPAPRWTAQPPRPSCASVVRPAAMSRRP
LTPVGSSRQVSTHVPHLVPHTQRVANIGTQTTGPSMTGCSTPSRPLLTHTYSTPAHRTDR
VQEPAVHVPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNS
ELLLMLESPESLNAKVEEALAVLQAHQATEHMQGVNLC
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaaaacccaggtgtcttgccgtagagtgccgccctctccgcgccgctggcgc
cggcccggagccctacccggggccagcggcccgggctacccgctcgcctcgctctacgtg
ggcgatctgcacccggacgtgaccgaggccatgctctacgagaagttctcgcccgctggc
cccatcctgtccatccgcgtgtgccgcgacgtggccacgcgccgctcgttgggttacgcc
tacatcaacttccagcagcccgcggacgcggagcgggcactggacaccatgaactttgag
gtgatcaaaggccagcccatccgcatcatgtggtcccagcgagacccaggacttcgtaag
tcaggtgtgggcaacatcttcatcaagaacctggaggactccattgataacaaggccktg
tacgacaccttctccacctttgggaacatcctgtcttgtaaggtggtgtgtgatgagcac
ggctcccgcggctttggctttgtgcattttgagacccacgaggctgcgcagaatgccatc
agcaccatgaacggaatgctgctgaatgaccgcaaagtcttcgttggccacttcaagtcc
cgacgggagcgggaggtggagctgggcgctcgggccatggagttcaccaacatctacgtg
aagaacctccacgtggacgtggatgagcagcgcctgcaggacctcttctcccagtttggg
aagatgctgagtgtcaaggtgatgagggatgacagtggccactcccgcggctttggcttt
gtcaacttcgagaagcatgaggaagcccagaaggctgtggtgaacatgaacgggagggag
gtragcgggcggctgctctacgtgggccgggcccagaagcgggtggagcggcagaatgag
ctgaagcgcaggttcgagcagatgaagcaggaccggctgacccgttaccagggcgtgaac
ttgtatgtgaagaacctggatgactccatagatgatgagaaactgaggaaagagttctct
ccctatggagtgatcaccagtgccaaggtgatgacagagggtggccacagcaaagggttt
ggctttgtgtgtttttcctctccagaagaggcgaccaaggccgtgacagagatgaacggg
cgcatcgtgggcaccaagccactgtacgtggcgctggcccagcgcaaggaagagcggaag
gccatcctgaccaaccagtacatgcagcgcctctccaccatgcgggccctgggcggcccc
atcctgggctccttccagcagcctgccagctacttcctgcccgctgtgccccagcctcca
gctcaggctccctactatggctctggcccacccatccagcctgcccccaggtggacggcc
cagccacccagaccgtcatgtgcctcggtggtccggccagcagccatgtctcggcgcccc
ttgacccccgttggaagctccaggcaggtctccacccaygtgccacacctggtgccccac
acccagcgagtggccaacattggtacccagaccacaggacccagtatgackggatgctct
acccctagcaggcctctcctgacacacacatactccacrccagcacaccgcactgacagg
gtccaggagcccgctgtgcacgtccccggacaggagcccctgaccgcgtccatgctggct
gcagcaccgctgcacgagcagaagcagatgatcggtgagcgtctcttcccccttgtctac
aacgtccacgcccacttggccggcaagatcacgggcatgctgctggagattgacaactcg
gagctgctgctcatgctggagtccccagagtccctcaacgccaaggtagaagaggctctg
gcagtgctgcaggcccaccaggccacggagcacatgcaaggagtgaacctgtgctga
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