KEGG   Bos indicus (zebu cattle): 109571987
Entry
109571987         CDS       T04792                                 
Symbol
VPS4A
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu03250  Viral life cycle - HIV-1
biu04144  Endocytosis
biu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:biu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109571987 (VPS4A)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    109571987 (VPS4A)
  09143 Cell growth and death
   04217 Necroptosis
    109571987 (VPS4A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:biu04131]
    109571987 (VPS4A)
   03400 DNA repair and recombination proteins [BR:biu03400]
    109571987 (VPS4A)
Membrane trafficking [BR:biu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    109571987 (VPS4A)
DNA repair and recombination proteins [BR:biu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    109571987 (VPS4A)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_14 AAA_16 AAA_22 AAA_25 AAA_5 RuvB_N IstB_IS21 AAA_17 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 RNA_helicase AAA_24 PhoH ResIII AAA_28 AAA_7 Mg_chelatase NACHT Parvo_NS1 bpMoxR DUF5906 YhdB AAA_30 TPR_2
Other DBs
NCBI-GeneID: 109571987
NCBI-ProteinID: XP_019834067
UniProt: A0A6P5DAP0
LinkDB
Position
18:35482593..35496392
AA seq 437 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLRNKEKHGKKPVKENQSESKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTEANIHELARKTEGYSGADISVIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSIMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
EDLLKVKKFSEDFGQES
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgacaacgtcaaccctccagaaagccattgatctggtgacaaaagccacagaagaggat
aaagccaagaattacgaggaggctctccggctctaccagcatgccgtggagtacttcctg
cacgctatcaaatatgaagcacacagtgacaaagccaaggagagcattcgagccaagtgc
atgcagtacctggaccgggcggagaagctgaaggattacttacgaaacaaagagaagcat
ggcaagaagccagtcaaagagaatcaaagcgagagtaagggcagcgatagtgacagtgaa
ggggataatccagagaaaaagaaattgcaagagcagctgatgggtgccgtygtgatggag
aagcccaacatccggtggaatgatgtggctgggctggagggagccaaggaggccctcaaa
gaagctgtcattttgccaattaaattcccgcacttgttcacaggcaagcgcaccccttgg
cgggggatactgctctttggaccgcccggcacagggaaatcctacctggccaaagcagtg
gcaacagaggccaacaactccaccttcttctctgtgtcctcctcagacttgatgtctaag
tggctgggggagagcgagaagctggtcaagaacctgttcgagctggcccgccagcacaag
ccctccatcatcttcatcgacgaggtggattcgctctgcggatcccgcaacgagaatgag
agcgaggctgcccgcaggatcaaaaccgagttcctagtccagatgcagggggtggggaac
aacaatgatgggactctggtgctaggtgccacaaacatcccgtgggtgttggactcggcc
attagaaggaggtttgaaaagcgaatttatatcccattgccggaggaggctgcccgtgcc
cagatgttccgattgcatctggggagcactcctcacaacctcacagaggccaacatccac
gagctggcccggaagacagaaggctactcgggtgcagacatcagcgtcattgtgcgggac
tccctcatgcagcccgtgaggaaagtgcagtcagcaacacacttcaaaaaggtctgtggc
ccttcccgcaccaaccctagcattatgatcgatgacctcctgaccccatgctcaccgggg
gacccaggggccatagagatgacttggatggacgtccctggtgacaaactcctagagcct
gtggtttgcatgtcggacatgctccggtctttggccaccactcgacccactgtgaatgca
gaagacctcctgaaagtgaagaaattctcagaggactttggacaggagagttaa

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