Bos indicus (zebu cattle): 109572587
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Entry
109572587 CDS
T04792
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03015
mRNA surveillance pathway
biu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109572587 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
109572587 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
biu03021
]
109572587 (SYMPK)
03019 Messenger RNA biogenesis [BR:
biu03019
]
109572587 (SYMPK)
Transcription machinery [BR:
biu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109572587 (SYMPK)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109572587 (SYMPK)
U7-dependent histone pre-mRNA processing factors
109572587 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
109572587
NCBI-ProteinID:
XP_019835050
UniProt:
A0A6P5DBS1
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All DBs
Position
18:complement(53140085..53173419)
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AA seq
1272 aa
AA seq
DB search
MAASSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLNVLKHPASLEFQAQITTLLVDLGTPQVEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLPAQGQAISVVGSLSSMSSLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGVKGALDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSAKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMAILEASGKQEPETKEAPAGPLEEDDLEPLALAPPPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGLGGPSSSSSSSSARPGPPQPEEAIDFREEGPECETPA
IFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLLSKEERSPQPLTAAGEDTVQTPSPAT
EEVGEPETKGNS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcagccagcagtggggacagcgtcacacgccggagcgtggcatcacagttcttcact
caagaggaggggccgggcatcgatggcatgaccacatcagagagagtggtagatctcttg
aaccaggcagcactgatcaccaacgactcaaagatcacagtgctcaaacaggtgcaggaa
ctgatcatcaacaaagatcccacactactggacaacttcctggatgagatcatcgctttc
caggcagacaagtcyatcgaagtgcgcaaatttgtcatcggcttcatcgaggaggcttgc
aagcgagacattgagctgctgctgaaactgatcgcgaacctcaacatgctcttgagagac
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtgatcagtgagctccaggaggcctgctgggatatg
gtgtcggccatggctggggacatcatcctgctgctggactctgacaatgacggcatccgt
acccatgccatcaagttcgtggagggcctcatcgtcaccctttcgccccgcatggctgac
tcggaggtgccccgacgccaggagcacgacatcagcctggaccgcatccctcgtgaccac
ccctacatccagtacaatgtgctgtgggaagaaggcaaggcagccttggagcagctgctc
aagttcatggtgcaccccgctatctcctccatcaacctgaccacagccctgggctccctg
gccaatattgcccgccagaggcccatgttcatgtcagaggtgattcaggcctacgaaacc
ctccacgccaatctgcccccaacgctggccaaatctcaggtgagcagcgtgcgtaagaat
ctcaagttgcacctgttgaatgtgctaaagcacccagcgtccttggagttccaggctcag
atcaccaccctcctggtggacctrggcacgcctcaggtggagatcgcccgaaacatgccc
agtggcaaggatgcccgcaagcggccccgagacgactcggattccacactcaagaagatg
aagctggagcccaacctgggggaagacgatgaggacaaggacttggagccaggcccctcg
ggaacctcraaggcctcagcccagatctcaggccagtcagacacagacatcacagccgaa
ttcctccagcctctgctgacacccgacaacgtggccaatctggtcctcatcagcatggtg
tacctgcccgaggccatgcccgcctccttccaagcgatctacaccccagtggagtcagca
ggcaccgaagcccagatcaagcacctggctcggctcatggccacgcagatgacggccgca
ggactggggccaggcgtggagcagaccaagcagtgcaaggaggagcccaaggaggagaag
gtggtgaagccagagagcgttctgatcaagcggcgcctgccagcccagggccaggccatc
tcggtagtgggctccctgagctccatgtcctccctggaggaggaggcgccccaggccaag
aggaggccggagcccattatccccgtcacgcagccccggctggcgggtgctggcgggcgc
aagaaaatcttccgcctaagtgacgtgctgaagcccctgacggacgcgcaggttgaggcc
atgaagctgggcgctgtgaagcggatcctgcgggccgagaaggccgtggcctgcagcggg
gccgcccaggtgcgcataaagatcctggccagcctggtgacgcagttcgactcgggcctg
aaggccgaggtcctgtccttcatcctggaggacgtccgggcccgcctggacctggccttc
gcctggctctaccaggagtacaacgcctacctcgcagctggcgtcaagggcgccctggac
aagtatgaggactgcctcatccgcctgctctccggcctgcaggagaagccggaccagaag
gacgggatcttcaccaaggttgtgctggaggcgccgctgatcaccgagagcgccctggag
gtgatccgcaagtattgcgaggacgagagtcgcacctacctgggcatgtccactctccga
gacctgatcttcaagcgcccatcccgccagttccagtacctgcatgtcctgctagacctc
agctcccacgagaaggacaaggtgcgttcccaggccttgctgttcatcaagcgcatgtac
gaaaaggagcagctgcgagagtacgtggagaagtttgccctcaactacctgcagctcttg
gtccaccccaacccgccrtcggtgctrtttggagctgacaaggacacagaggtggccgca
ccctggaccgaggagacggtgaagcagtgcctgtacctctacctggctctcctacctcag
aaccacaagctgatccacgagctggcggccgtgtacacggaggccatcgctgacatcaag
aggacagtgctgagggtcatcgagcagccgatccgggggatgggcatgaactcgccagag
ctgctcctgctggtggagaactgtcccaagggggcggagacactggtcacccgttgtctg
cacagcctcacggacaaagtgcccccgtccccagagctggtgaagcgggtcagggatctc
taccacaagcgactgccagacgtccgcttcctcatcccagtgctcaatgggctggagaag
aaggaagtgatccaggccctgccaaagctcatcaagcttaaccccatcgtggtgaaagag
gtcttcaatcgcctgctgggcacccagcacggtgaagggaactcagccctgtcccccctg
aaccctggagagctgctcatcgccttacacaacattgactcggcaaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggccgtggtgatgcagcaactgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtccttgactatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccggctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcagcgcaccaagcctcagagcttccaggtcatcctgcagctcccaccscagcag
ctgggggcygtctttgacaagtgcccagagctccgggagcccctgctggcccacgtccgc
tccttcaccccccaccagcaagcgcacatccccaactccatcatggccatcctggaggcc
agcggcaagcaggagccagagactaaggaagcacctgccgggcccctggaagaggatgac
ttagagcctctggccctggcaccacctccggccccccgaccccctcaagatctcatcggc
ctgcggctggcccaggagaaggccttaaagcggcaactggargaagaacagaagctgaag
cctgggggactgggaggcccctcctcttcctcgtcctcttcctcggcgcggccaggcccc
ccccagccagaggaagccattgatttccgggaggaggggcctgagtgtgagaccccggcc
atcttcatcagcatggacgatgactcggggctgactgaggccgcactgctggactctagt
cttgagggacccctacctaaggaaactgcagcaggtggattgctttcaaaggaggagcgg
agcccccagcccctcacagctgctggagaagacacagtgcagactcccagccccgccact
gaggaagtgggcgaaccggagaccaaggggaatagctga
DBGET
integrated database retrieval system
