Bos indicus (zebu cattle): 109572827
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Entry
109572827 CDS
T04792
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109572827 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
biu03041
]
109572827 (DHX38)
Enzymes [BR:
biu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109572827 (DHX38)
Spliceosome [BR:
biu03041
]
Complex C
Other components
Step II factors
109572827 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Microtub_bd
Flavi_DEAD
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
109572827
NCBI-ProteinID:
XP_019835505
UniProt:
A0A6P5DDB7
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All DBs
Position
18:complement(38109245..38127069)
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AA seq
1226 aa
AA seq
DB search
MEDSGEDASLHRLEGTDVDSQVGGLIFKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRK
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEAEDSDQAGRSGRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKDEKDRKKERSRDRDCDRKRDRDERDRSRHSG
RSERDGGSDRSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR
DSERSHRPSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSDDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKSLTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVRGDTGTGALG
LHPISQANANQRSGIAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL
GVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIV
SCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLSYLNVYLQWKNN
NYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQA
AKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWL
AELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRS
TKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagtggtgaggatgcctcgctccatcggttggaaggcactgacgtggactct
caggttggcggccttatttttaagaccaaaagtgcggctagtgagcagcatgtcttcaag
gcccctgcaccccggccttcattgctgggactggacttgttggcttctctgaagaggaag
gagagagaggagaaggatgatggcgaggacaagaagaagtccagaatctcttcgtacaag
gattgggaagagagcaaggatgaccagagggacgctgaggcagaagacagtgaccaggct
ggccgaagtggccgaaaagacaggcattaccgatcagcccgggtggagactccatcccat
cctggtggtgtaagtgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gagcatggcgtctatgcctcatccaaagacgaaaaggatcggaagaaggagaggtcacgg
gatcgagactgtgaccgcaagagagacagagatgagcgggacagaagcaggcacagcggc
agatcggagcgagatggagggtcagatcgcagcagcagaagaaatgaacccgagagcccc
cgacaccggcctaaagatgctgccaccccttcacggtctacctgggaggaagaggacagt
ggctatggctcctcgaggcgctcacagtgggaatcgccctcccccacgccttcctatcgg
gattccgagcggagtcatcggccgtccagtcgagacagggacaggtctgtgaggagcagg
tattcagatgacacccctctgccaaccccatcctacaaatacaacgagtgggccgatgac
agaagacacctggggtccaccccacgtctgtccaggggccgagggagacgtgaggatggc
gaagaaggaatttcatttgacacagaagaggaacggcagcagtgggaggatgaccagagg
caagccgaccgggattggtacatgatggacgaggggtatgatgagttccacaaccccctg
gcctactcctccgacgactacgtgaggaggcgggagcagcacctacacaaacagaagcag
aagcgcatttcggctcagcggagacagatcaatgaggacaacgagcgctgggagaccaac
cgcatgctcaccagcggggtggtgcaccggctggaggtggacgaggacttcgaggaggac
agcgcggccaaggtgcacctcatggtgcacaacctggtgccgccctttctggacgggcgc
atcgtcttcaccaagcagccggagcctgtgattccagtcaaggacgccacttcagactta
gccatcattgctcggaaaggcagtcaaacagtgcggaaacacagggagcaaaaggagcgc
aagaaggctcaacacaaacattgggaattggctggaaccaaactgggagatataatgggc
gtcaaaaaagaagaagagccggataaatctctgaccgaggatgggaaagtggactacagg
acagagcagaagtttgccgaccacatgaagaagaagagcgaggccagcagcgagtttgcc
aagaagaagtcgattctggagcagaggcagtacctgcccatcttcgctgtgcagcaggaa
ctcctcacgatcatcagagacaacagcatcgtgatcgtggttggggagacagggagtgga
aagaccacgcagctgacccagtacttgcatgaagacggctacacggactatgggatgatc
ggatgcacccagccccgccgtgtggccgccatgtcggtggccaagagagtcagtgaagag
atggggggaaacctcggtgaggaggtgggctatgccatccgcttcgaagactgcacttca
gaaagcaccttgatcaagtacatgactgatggcatcctgctgagagagtccctgcgggaa
gcggacctggatcactacagcgccatcatcatggacgaggcccatgagcgctccctcaac
accgacgtgctcttcgggctgctccgggaggtggtggctcggcgctcagacctgaagctc
attgtcacatcagccaccatggacgcagagaaatttgcctccttttttgggaacgtcccc
atcttccacatccctggacgtaccttccctgtggacattctcttcagcaagaccccgcag
gaagactacgtggaggccgcggtgaagcagtccctccaggtgcatctgtcgggggccccc
ggggacatcctcatcttcatgcctggccaagaggacattgaggtgacctcagatcagatc
gtggagcacctggaagaactagagaacgcgcccgccttggccgtgctgcccatctactcg
cagctgccctctgacctccaggccaagatcttccagaaggctccagatggcgtccggaag
tgtattgtcgccactaacattgctgagacctccctgactgtcgacggcatcatgtttgtt
atcgattccggttattgtaagttaaaggtaagaggagacacaggcactggggccctgggc
cttcaccccatcagccaggccaatgccaatcagcggtcgggcatagccggcaggacgggc
ccaggtcagtgtttcagactctacacccagagtgcctacaagaacgagctcctgaccacc
acggtgcccgagatccagcggaccaacctggccaacgtggtgctgctgctcaagtccctg
ggggtgcaggacctgctgcagttccacttcatggacccacccccggaggacaacatgctc
aactccatgtatcagctctggatccttggggccctggacaacacaggtggtctgacctcg
acggggcggctgatggtggagttcccgctggacccggccctgtccaagatgctcatcgtg
tcctgtgacatgggctgcagctccgagatcctgctcatcgtctccatgctctcggtccca
gccatcttctacaggcccaagggccgagaggaggaaagcgatcaaatccgggagaagttc
gcagtccctgagagtgaccacctgagctacctgaacgtctacctgcagtggaagaacaat
aattactccaccatctggtgtaatgatcatttcatccacgccaaggccatgcggaaggtc
cgggaggtgcgggctcagctcaaggacatcatggtgcagcagcggatgagcctggcctcg
tgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctatttccaccaggca
gccaagctcaagggaatcggggagtatgtgaacatccggacaggcatgccctgccacctg
caccctaccagctccctctttggaatgggctacacccccgactacattgtgtatcacgag
ttggtcatgaccaccaaggagtacatgcagtgtgtgactgccgtggacggagagtggctg
gcagagctgggccccatgttctacagcgtgaaacaggctgggaagtctcggcaggagaac
cgccgacgggccaaagaggaagcgtctgccatggaggaggagatggcactggctgaggag
cagctgcgggcccggcggcaggagcaggaaaagcgcagcccgctgggcagcgtcaggtct
acgaagatctacactcctggtcggaaggagcagggggaacctatgaccccccgccgcacg
ccagcccgctttgggctctga
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