Bos indicus (zebu cattle): 109573389
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Entry
109573389 CDS
T04792
Symbol
DDX42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109573389 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
biu03041
]
109573389 (DDX42)
Enzymes [BR:
biu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109573389 (DDX42)
Spliceosome [BR:
biu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109573389 (DDX42)
Complex B
109573389 (DDX42)
Complex C
U2 SnRNP specific factors
109573389 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109573389
NCBI-ProteinID:
XP_019836141
UniProt:
A0A6P5DD07
LinkDB
All DBs
Position
19:49577995..49613825
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AA seq
947 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGAASSASGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GXSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGXNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASATKGIPGFGSPGNLSSAPVTY
PSAGAPGVNNTASGSNSREGTGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGGRHGDGYRYPESSSRHTDSRRHADGHPHGENRHGGGGGRHGESRGANDGRNGESRK
ESCNRESKMDPKVDSPKVDKMDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccccggcaccaagaggggctttggctttggcggttttgcc
atcagtgctggcaagaaggaggagccgaagctcccgcagcagtcccatagtgcctttggg
gcagccagctctgcttctggctttggaaagtcggctccaccccagctcccttctttctac
aaaattggttctaaacgggccaatttcgatgaagaaaatgcatattttgaagatgaggaa
gaagattctagcaacgttgatttaccttacattcctgctgagaactcacctacccgccag
caattccattccaagccagtagactctgacagtgatgatgatcccttagaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtatatggcagagaatccaactgctggtgtggttcaagaggaggaggaagataat
ttggaatatgatagtgatggaaatccaattgcaccttcaaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgagaaaaatttttacaatgaa
catgaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaac
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaagtctgagtacacacagcccactccaatacag
tgccagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaaccgctgccttcatctggcccatgttgattcatataatggaccagaaagaa
ctggaaccaggtgatggaccaattgcagtgattgtgtgtcccactagggagctctgccag
cagatccatgcagagtgtaagcggtttgggaaggcatacaatcttcgatcagtggctgtg
tatggaggagggagcatgtgggaacaggccaaggcccttcaggaaggggcagagattgtt
gtttgtacaccaggtcgactgattgatcatgtgaagaagaaagctaccaaccttcagaga
gtctcctaccttgtgtttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtycgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagatcgaaaaactggccagagacatcctgattgaccccattcgtgtggta
cagggagatattggagaggcaaatgaagatgtgactcagattgtggagattctccattct
gganctagtaaatggaactggctcacccggcgtctagtggagtttacctcttcagggagt
gtcctcctgtttgttactaagaaagccaatgctgaagagctggccaataaccttaagcag
gagggtcataatcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggtt
atttcagactttaagaaaaaggacatccccgtcctagtggccacagacgttgcagcccgt
ggtctggacatcccttcaattaagactgtcattaactatgatgtggcacgagatattgac
acccatactcataggattggccgcacaggacgagcgggtgagaagggcgtggcctatacc
ttgctgacacccaaggacagcaattttgctggtgaccttgttcggaacttggaaggagcc
aatcagcatgtttccaaggagctcctagatctggccatgcagaatgcctggtttcggaaa
tcccgcttcaaaggaggaaaggggaaaaagctgaacattggtggcggaggcctgggctac
cgggagcggcctggccttggctctgagaactcggaccgaggaartaacaacaacgtaatg
agcaattatgaggcctacaagccctccacgggagccatgggagaccggctgacggctatg
aaagcggctttccagtcacagtacaagagtcactttgttgctgccagtttaagcaaccag
aaggctggaagctctgcagctggggcgagcggatggactagtgcagggagcttgaattca
gttccaactaattcagcccagcagggccacagcagtcctgacagccccattgccagcgcc
acgaagggtatcccaggctttggcagtcctgggaacctcagcagtgccccggtgacctac
ccttctgccggagctccaggggtcaacaacacagcttcagggagtaacagccgagaaggg
actgggggtggcaatgggaaaagagagcgatatactgagaaccggggtggaagtcgtcac
agccatggagagagtggcaatcggcatggcgatagcccacggcatggagatgggggtcgc
catggagatgggggtcgccacggagatggataccgctacccagagagcagcagccgtcac
accgatagccgccgtcatgctgatggtcatcctcatggagagaacaggcatggagggggc
ggaggccgacacggggagagccggggtgccaatgacggtcggaatggtgaaagcaggaag
gaaagttgtaatcgtgaaagcaagatggaccccaaggtggacagccccaaggtggacaag
atggacagcaagacagataagactcctgatggttttgctgtccccgagccgcccaagcgc
aagaaaagtcggtgggacagttag
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