Bos indicus (zebu cattle): 109573507
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Entry
109573507 CDS
T04792
Symbol
PRPF8
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109573507 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
biu03041
]
109573507 (PRPF8)
Spliceosome [BR:
biu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109573507 (PRPF8)
Complex C
U5 SnRNP specific factors
109573507 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109573507
NCBI-ProteinID:
XP_019836304
UniProt:
A0A6P5DFA1
LinkDB
All DBs
Position
19:complement(22844208..22876893)
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AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccttaccgagggccgggtaacccggtgcctggccctttagccccg
ctgccagactacatgtcggaggagaagctgcaggagaaagcccggaaatggcaacaattg
caggccaagcgctatgccgaaaagcggaagtttggatttgtggatgcgcagaaggaagac
atgcctccagaacatgtcaggaagatcatccgagaccatggagacatgaccaacaggaag
tttcggcatgataaaagggtgtacttgggggccctcaagtacatgccgcatgcagtcctc
aagctcctggagaacatgcctatgccttgggagcagattcgggatgtgcctgtgctgtac
cacatcaccggagccatttcctttgtcaatgagatcccctgggtcattgaacctgtctac
atctcccagtgggggtcaatgtggattatgatgcgtcgggaaaaaagagacaggaggcat
ttcaagaggatgcgtttccccccttttgatgatgaggagccacctttggactatgctgac
aatattctagatgttgagccactggaagccattcagctagagctggaccctgaggaggat
gcccctgtgttggactggttctatgaccaccagccattaagggatagccggaagtatgta
aatggttccacttaccagcgctggcagttcacattgcctatgatgtccactctctaccgc
ctggccaatcagctcttgacagacttggttgatgacaattacttctatctgtttgatctg
aaggccttttttacatccaaggcacttaatatggccattcctggaggccccaaatttgag
cctcttgtccgagacatcaacctacaggatgaagactggaatgaattcaatgacatcaac
aagatcatcatccggcagcctatccgcaccgagtacaagattgcgtttccttacctgtac
aacaacctgccgcaccatgtccacctcacctggtaccacactcctaatgttgtgttcatc
aaaactgaggatcctgatttgccagctttctactttgatcctttgatcaacccaatttcc
catagacactctgtcaagagccaggaaccattgccagatgacgatgaggagtttgagctc
ccagaatttgtggagccctttctgaaggacacacccctctacacagacaatacagccaat
ggcatcgccctgctctgggccccccggcccttcaacctacgctctggtcgcactcgccgg
gccctagacatcccccttgtcaagaactggtatcgggagcattgtcctgctgggcagcct
gtgaaagtgagggtctcctaccagaagctgcttaagtactatgtgctcaatgccctgaag
caccggcccccgaaagcccaaaagaagaggtatctattccgatccttcaaagccaccaaa
ttcttccagtctaccaagctggattgggtggaggtggggctacaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccgaaagaacctcaactatctgcacctggattac
aacttcaaccttaaacctgttaagacgctcaccaccaaggaaaggaagaaatctcgtttt
ggaaatgctttccatctgtgtcgagaagttctgcgtctaactaagctggtggtggacagt
catgtgcagtatcggttgggcaatgtggatgccttccagctggcagatgggttgcagtat
atcttcgcccacgtggggcagctgacgggcatgtaccgctacaaatacaagctgatgcgg
cagattcgtatgtgcaaggacttgaagcaccttatctattatcgctttaacacgggtcct
gtagggaagggccctggctgtggtttctgggctgctggctggcgggtctggctgtttttc
atgcgtggaatcacccctttgctggagcgatggctgggcaacctcctggcccggcagttt
gaaggccgacactcaaagggggtggccaagacggtaacaaagcagcgagtggagtcacat
tttgaccttgagcttcgggccgctgtgatgcatgacatcctggacatgatgcctgagggg
atcaagcagaacaaggcccggacgatcctgcagcacctcagtgaggcctggcgctgctgg
aaggccaacattccctggaaggtccctgggctgccaacaccgatagagaatatgattctt
cggtacgtgaaggccaaggctgactggtggaccaacaccgcccactacaaccgagagcgc
atccgccgcggggccaccgtagacaagactgtgtgcaaaaagaacctgggccgcctgact
cggctctacctgaaggcagagcaggagcggcagcacaactacctaaaggacggtccttac
atcacagcggaggaagcggtggcggtgtataccactactgtgcattggctggaaagccgt
agattctcacccatccccttccccccgctctcctacaagcatgacaccaagttgctgatc
ttggctttggagcggctcaaggaagcttacagtgtgaagtctcgattaaaccagtctcag
agggaggagctaggtctgatcgagcaggcctatgacaacccccatgaggcgctgtcccgc
atcaagcgacacctccttacacagagagcctttaaagaagtgggcattgagttcatggac
ctctatagccacctggtgccagtgtatgatgtggagccactggagaagatcactgatgcc
tacctggaccagtacctgtggtacgaagctgacaagcgccgcctgttcccaccctggatc
aagcctgcagacacagaaccacctcctctgcttgtttacaaatggtgccaaggcatcaat
aacctgcaggatgtgtgggagacaagcgagggcgagtgcaatgtcatgctggagtcacga
tttgagaagatgtatgagaagattgacttgaccttgctcaataggctgctgcgtctaatc
gttgaccacaatatagctgactacatgacagccaagaacaatgtcgttatcaattacaag
gacatgaaccatacaaattcatacgggatcatcagaggcctgcagtttgcctctttcatt
gtacagtactacggcctggtgatggacttgcttgtgttggggttgcaccgagccagtgag
atggccgggccacctcagatgccaaatgattttctcagtttccaagacatagccaccgag
gctgcccaccccatccgtctcttctgcagatacattgatcgcatccatattttcttcagg
ttcacagcagatgaggctcgggacctgatccagcgttacctgacagagcaccctgacccc
aacaacgaaaacatcgttggctacaataacaagaagtgctggccccgagacgcccgtatg
cgcctcatgaagcatgatgtcaacctaggtcgggcagtgttctgggacatcaagaaccgt
ctgccacgctcagtgactacagttcagtgggagaacagcttcgtgtccgtgtacagtaag
gacaatcccaacctgctgttcaacatgtgtggttttgagtgccgcatcctgcctaagtgc
cgcaccagctacgaggagttcacccacaaggacggggtctggaacctacagaacgaggtg
actaaagagcggacagctcagtgtttcctgcgtgtggatgatgagtcaatgcagcgcttc
cacaaccgcgtgcgtcaaattctgatggcctctggctccaccaccttcacgaagattgtg
aataaatggaacacagctcttattggccttatgacatactttcgagaggctgtggtaaac
acccaggagctcctggacytgctggtgaagtgtgagaacaagatccagacacgaatcaag
attggcctcaactccaagatgccgagtcgattcccccctgtcgttttctacacccctaag
gagttgggtggacttggcatgctttcaatgggccatgtgctcattccccagtctgacctc
aggtggtccaagcagacagatgtaggtatcacacacttccgttcaggaatgagccatgaa
gaagaccagctgattcccaatttgtatcgctacatacagccatgggagagtgagttcatt
gattctcagcgggtctgggctgagtatgcactcaagagacaagaggccattgctcagaac
agacgattgaccctagaagatctagaagattcatgggatcgtggcattcctcgaatcaac
actctgttccagaaggacaggcacacactggcttatgataagggctggcgtgttcgaact
gactttaagcagtaccaggttttgaagcagaatcctttctggtggacacaccagcggcat
gatgggaagctctggaacctgaacaactaccgtaccgacatgatccaggccctgggtggt
gtggaaggcattctggaacacaccctcttcaagggcacttacttccctacctgggagggg
cttttctgggagaaagccagtggttttgaggagtccatgaagtggaagaagctcaccaat
gcccagcgatcaggattgaaccagattcccaatcgtaggttcaccctctggtggtcccca
accatcaaccgagccaacgtgtacgtgggctttcaggtgcagctggacctgaccggtatc
ttcatgcacggcaagatccccacgctgaagatctctctcatccagatcttccgagctcac
ttgtggcagaagatccacgagagcatcgttatggacttgtgtcaggtgtttgatcaggaa
ctggatgcactggagatcgagacagttcagaaggagacaatccacccccgaaagtcctat
aagatgaattcttcctgtgcagatatcctgctgtttgcatcctataagtggaatgtctcc
cggccctcattgctggccgactctaaggatgtgatggatagcaccaccactcagaagtat
tggattgacatacagttgcgctggggggactacgattcccatgacatcgagcgttatgcc
cgggccaagttcttggactacaccacagacaacatgagtatctacccttcgcccactggt
gtgctcattgccattgacctggcatataacctgcatagtgcctatggaaactggttccct
ggcagcaagcctctcatacagcaggccatggccaagatcatgaaggcaaatcctgccttg
tatgtgttacgtgaacggatccgtaaggggctgcagctctattcatcggagcccactgag
ccctatctgtcctctcagaactacggtgagctcttctccaaccagattatctggtttgtg
gatgacactaatgtctacagagtgactatccataagacctttgaagggaacttgaccacc
aagcccatcaatggggccatcttcatcttcaacccacgcacagggcagctttttctcaag
ataattcacacatctgtgtgggctggacagaagcgtttgggacagttggctaaatggaag
acagctgaggaggtggctgccctaatccgatctctgcccgtggaggagcagcccaagcag
atcattgtcactaggaaaggcatgctggatccactggaggtgcacttgctggacttcccc
aatattgtgattaaaggatcagagctccagctccccttccaggcttgcctcaaggtggag
aagtttggggatctcatccttaaagccactgagccacagatggttctctttaacctctat
gacgactggctcaagactatctcatcttacacggccttctcccgcctcatcctgatcctg
cgcgccctgcacgtaaacaacgaccgcgcgaaggtgatcctgaagccggacaagaccacg
atcacagagccgcaccacatctggcccactctgaccgacgaggagtggatcaaggtggag
gtgcagctcaaggaccttatcttggctgactacggcaagaaaaacaatgtgaatgtggca
tcgctgacacagtcagaaattcgggacatcatcctggggatggagatctcagcaccatca
cagcagcggcagcagattgctgagattgagaagcagaccaaggaacagtcgcagctgact
gcaacccagactcgcactgtcaataagcatggtgacgaaataatcacctctaccaccagc
aactacgagacccagactttctcctctaagactgaatggagggtcagggccatctctgcc
gccaacctgcacctaaggaccaatcacatctatgtttcatctgatgacatcaaggagact
gggtacacctatatccttcccaagaacgtgcttaagaagtttatctgcatatctgacctt
cgggcccaaattgcaggttacctgtatggggtgagcccaccagataacccccaggtgaag
gagatccgctgcatcgtgatggtaccacagtggggcactcaycagactgtgcacctgcct
ggccagctgccccagcacgagtacctcaaggagatggaacccttaggttggatccacact
cagcccaacgagtctcctcagctgtcaccccaggatgtcaccacccatgccaaaatcatg
gctgacaacccatcttgggatggcgagaagaccattatcatcacctgcagcttcacacca
ggctcctgcaccctgacagcctacaagctgacccccagtggctatgaatggggccgccag
aacacagacaagggcaacaaccccaaaggctacctaccctcgcactacgagagggtccag
atgctactgtcggatcgcttccttggcttctttatggtgcctgcccagtcctcgtggaac
tacaacttcatgggtgtccggcatgatcccaacatgaagtacgagctgcagctggcaaac
cccaaagagttctaccacgaggtgcaccggccctcccacttcctcaacttcgctctcctg
caggagggcgaggtctactctgcggaccgagaggacctctatgcgtag
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integrated database retrieval system
