Bos indicus (zebu cattle): 109573805
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Entry
109573805 CDS
T04792
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109573805 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
biu03400
]
109573805 (LIG3)
Enzymes [BR:
biu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109573805 (LIG3)
DNA repair and recombination proteins [BR:
biu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
109573805 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
109573805
NCBI-ProteinID:
XP_019836816
UniProt:
A0A6P5DF12
LinkDB
All DBs
Position
19:complement(14537797..14559227)
Genome browser
AA seq
1002 aa
AA seq
DB search
MTLAFKILFPPTLRVLRKKELCLFREHRRPDIRHFGRWSETVFCGHHLLQRRKPVPSFQE
SNLKPRATCLVYLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGK
VVPNPFSESGGDMKEWYHIKCMFEKLEXARATTKKIEDLTELEGWEELEENEKEQISQHI
ADLSSKATSTPKKKAVVQAKLTATGQVASPVKGASFVTNSNPRKFSGFSAKPNNSGEAHS
SPTPKTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDG
FHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMTRDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDFIPRAFPGGHSMILDSEVLLIDNRTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKLLHDNMVEIPNRIMFSEMKQVTKASDLVDMINRVIQEGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
SSQKWCTVTKCAGGHDDATLARLQTELDMVKISKDPSKIPNWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATTLPQLKELYQLSKERAAF
AITAGDEGSSATGGSSGENEGTSGPAVPHKAPRASPKQPPTSAKKAGGKPGGCTSRGGNL
PAAEPSPVRAGVKRKAPDVTPCQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLV
QEFDVGSATHVLGGGDRNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgactttggcttttaagatcctcttcccaccaactctccgtgtactcaggaaaaaagaa
ctgtgcctattccgagaacatcgccggcctgacataagacactttggccggtggtcagag
acagttttttgtggacaccacctcctccagagaagaaagcctgttccgtccttccaggaa
agcaacctaaaaccacgtgccacctgccttgtttacttgccagggtcgcatgtgggactc
tgyagtggcccctgtgagatggcagagcaacgcttctgtgtggactacgccaagcgtggc
acggctggctgcaaaaaatgcaaggaaaagattgtcaagggcgtatgccgaatcggcaaa
gtggtgcccaatcccttttcagagtcggggggcgatatgaaagagtggtaccacattaaa
tgcatgtttgagaaactggagckggcccgggccaccacaaaaaaaattgaggacctcacc
gagctggaaggctgggaagagctggaagagaacgagaaagagcagataagtcagcacatt
gcagatctgtcttccaaggcaacaagcacaccaaagaagaaagctgttgtccaggckaag
ttgacagccactggccaggtcgcatctccagtgaaaggtgcctcatttgtcaccaattcc
aatccccggaagttttctggcttttcagccaagcccaacaactctggggaagcccactcc
agccctacccctaagacccctaagacaagtctgtcctcaagcaaatgtgacccgaaacac
aaggattgtctgctgcgtgagtttcggaagttgtgtgccatggtggctgaaaatcctagc
tacaacacgaaaacccagatcatccaggacttccttcagaaaggctcagcaggagatggt
ttccacggtgaygtgtacctaacagtgaagctgctgctgccgggtgttattaagagtgtt
tacaacttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaactca
gatgacatgacacgagacctagagcagggtgacgtgtcagagacaatcagagtcttcttt
gagcagagcaagtctttccctccagctgccaagagcctccttaccatccaggaggtggac
gaattcctcctgcggctctccaagctcaccaaggaggatgagcagcaacaggccctgcag
gatatcgcctccaggtgtacagccaatgaccttaagtgcatcatcaggctgatcaagcat
gacctgaagatgaactcaggggcaaaacacgtgctagatgcgctagaccccaatgcctat
gaagccttcaaagcctcacgcaacctgcaggatgtggtggagcgggtcctccgcaacgag
caggaggtrgagaaggagccaggccagagacgagctctgagtgtccaggcctcyctgatg
accccagtgcagcccatgctggctgaggcctgcaagtccatcgagtatgccatgaagaag
tgtccaaacggcatgttctctgagatcaagtatgacggggarcgagtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctcaagcccgtcctgccacacaaggtg
gcccactttaaggacttcatcccccgggctttccctgggggccacagcatgatcttggac
tctgaggtgctcctgatcgacaacaggacaggcaaaccactgccctttgggaccctggga
gtgcacaagaaagctgccttccaggatgccaatgtctgcctgtttgtttttgattgtatc
tacttcaatgatgtcagcttgatggataggcctctgtgtgagcggcggaagcttcttcat
gacaacatggtggagattcccaaccggatcatgttctcagaaatgaaacaagtcacaaaa
gcttccgacttggtggacatgatcaacagggtgatccaagaggggctggaagggctggtg
ctgaaggacgtgaagggtacatatgagcctggaaagcgtcattggctgaaagtgaagaaa
gactatttgaacgagggtgccatggccgacacagctgacctggtggtgcttggggccttc
tacgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccg
agcagccagaagtggtgcaccgtcaccaagtgtgcaggaggccacgacgacgcgacgctc
gcccgcctgcagacggaactggacatggtgaagatcagcaaggatcccagcaagataccc
aactggctgaaaatcaataagatctactaccctgacttcatcgttccagacccaaagaaa
gctgccgtgtgggagatcacaggggctgaattctcgaaatctgaggctcacacagctgat
gggatctccatccgattccctcgctgcacccgaatccgtgatgataaggactggaagtcc
gccacgaccctcccccaactcaaggagctgtaccagctgtccaaggagcgcgcggccttc
gccataacggccggagacgaggggagctccgccacagggggcagcagtggggagaacgag
ggcacctcagggccggctgtgcctcacaaggccccaagagcctcccccaagcagcctccc
accagcgccaagaaggctgggggcaagccgggcggctgcaccagcagaggtggcaacctg
ccagctgcagagccctcccctgtgagagcgggagtgaaacggaaggctcctgatgtgacc
ccgtgccaagccaaggtgctgctggacatcttcactggagtgcggctctacctgccgccc
tccacgccagacttcagccgcctcagacgctactttgtggcattcgatggggacctggta
caggaatttgacgtgggctcagccacacatgtgctgggtggcggggacaggaaccccgag
gcccagcaggtctcccccgagtggatttgggcgtgtatccggaaacggaggctggtggct
ccttgctag
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