KEGG   Bos indicus (zebu cattle): 109574142
Entry
109574142         CDS       T04792                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu03013  Nucleocytoplasmic transport
biu03015  mRNA surveillance pathway
biu03040  Spliceosome
biu05014  Amyotrophic lateral sclerosis
biu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:biu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109574142 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    109574142 (ALYREF)
   03015 mRNA surveillance pathway
    109574142 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109574142 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    109574142 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:biu03019]
    109574142 (ALYREF)
   03041 Spliceosome [BR:biu03041]
    109574142 (ALYREF)
Messenger RNA biogenesis [BR:biu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109574142 (ALYREF)
    TREX complex
     109574142 (ALYREF)
Spliceosome [BR:biu03041]
 Complex C
  Other components
   EJC/TREX
    109574142 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109574142 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 109574142
NCBI-ProteinID: XP_019837497
UniProt: A0A6P5DJZ7
LinkDB
Position
19:52487486..52491332
AA seq 257 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRSRAGSQGGRGGGAQAAARVNRGGGPIRNRPA
IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDA
DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL
VTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRGTRGGSRGRGRGTGRSSKQQLSA
EELDAQLDAYNARMDTS
NT seq 774 nt   +upstreamnt  +downstreamnt
atggccgacaaaatggatatgtctctggacgacatcattaagctgaaccggagccagcga
ggcggccgcggcgggggcaggggccgcagccgcgccggctcccagggtggccgcggcggc
ggggcccaggccgccgcgcgagtgaaccgaggcggcggacccattcggaatcggccggcc
atagcccgcggcgcggcgggcggcggcggcaggaaccggccggcgccctacagcaggccg
aaacaacttcccgacaaatggcagcatgaccttttcgatagcggttttgggggtggtgcc
ggcgtggagaccggtgggaaactgctggtgtcaaatctggattttggagtgtccgacgct
gatattcaggagctstttgctgaatttggaactctgaagaaggcggctgtgcactacgac
cgatctggccgcagtttaggaacagctgacgtgcactttgagcggaaggcagatgcacta
aaagctatgaaacagtacaacggcgtccctttggatggccgccccatgaacattcagctc
gtcacctcacagattgacacgcagcggagacctgcacagagtgtaaacagaggtgggatg
actagaaaccgtggttcaggaggttttggtggtggcggcggcacccggagaggcacccgt
ggaggcagccggggcagaggcagaggcaccggcaggagttcaaagcagcagctttccgca
gaagagttagatgcccagctggatgcttataatgcaagaatggacaccagttaa

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