Bos indicus (zebu cattle): 109575895
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Entry
109575895 CDS
T04792
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04151
PI3K-Akt signaling pathway
biu04510
Focal adhesion
biu04512
ECM-receptor interaction
biu04820
Cytoskeleton in muscle cells
biu04926
Relaxin signaling pathway
biu04933
AGE-RAGE signaling pathway in diabetic complications
biu04974
Protein digestion and absorption
biu05146
Amoebiasis
biu05165
Human papillomavirus infection
biu05200
Pathways in cancer
biu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
109575895 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109575895 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109575895 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109575895 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
109575895 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
109575895 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
109575895 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
109575895 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
109575895 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
109575895 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
109575895 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
biu04147
]
109575895 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
biu00536
]
109575895 (COL4A4)
Exosome [BR:
biu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109575895 (COL4A4)
Glycosaminoglycan binding proteins [BR:
biu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109575895 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109575895
NCBI-ProteinID:
XP_019839699
UniProt:
A0A6P5DP96
LinkDB
All DBs
Position
2:complement(119640976..119831054)
Genome browser
AA seq
1582 aa
AA seq
DB search
MALVRRPFKCNKXLATNSWSLILILFSVQYAYGGGKKFIGLCGGRDCSLCQCFPEKGSRG
QPGPAGPQGPIGPLGPPGPTGIPGEKGMKGDSGRPGAAGDVGDKGPTGVPGFPGLDGIPG
HPGPPGSRGRPGIDGYNGSRGDPGIPGERGALGPRGPPGLPGEKGEKGNSVFILGATKGM
QGDRGDPGPPGSPGSRGVRGPAGPVGYPGEPGLAGPPGPPGSPGLKGNPGVGVKGQMGDP
GIKGMPGMTGLPGPPGPRGEPGIGRKGEKGIPGFPGPRGDPGSYGSPGFPGLKGEPGLFG
DPGSFGFLGPKGDPGDRGHPGPPGVLVTPSLPLKGPPGDPGRPGRYGETGAVGPRGPPGA
PGRPGEACPGMTGPPGPRGFPGHPGFPGAAGVPGRADSAPGKPGNQGPTGLPGVPGLPGP
PGSDAVYCTVGQPGPQGTKGKVGPPGRRGSKGEKGSSGLCACQPGPMGPSGPPGPPGRQG
SKGDLGLPGWLGEKGSPGPPGAKGSPGPPGKPGASGLPGSKGEKGDMVVSRVKGHKGERG
PDGPPGLPGQQGQHGRDGYAGEKGDTGPPGDHEDAAPGDKGPPGPPGPPGRAGPRGPPGL
GFPGPPGDRGQPGAPGYPGNRGPDGRKGRKGDTIPCNVTYPGRPGPPGFDGPPGPKGLPG
HRGAPGLRCLDGQKGQRGKPGISERPGPPGFRGDIGEPGLGGEKGSSPVGPPGTPGSPGV
NGQKGPPGDPAIGYPGLPGKSGLPGAPGSKGLRGDAGRPGTAGPAGMPGFPGLQGPKGRE
GNAGFPGIPGPPGHSCERGAPGIPGQPGLPGAPGSPGAPGWKGQRGDMGPLGPAGMKGLP
GVPGWPGADGTPGLPGVPGPTGDDGLPGLPGPKGPQGLPGFLGFPGERGKPGQDGHPGRK
GEHGEKGWPGFLGDRGLKGVKGARGPPGYEGETDIISKKGETGEPGPSGDGGFPGENGDK
GHPGMQGRRGEPGSHGPPGFHPGEPGRNGQPGLPGPPGPPGSPGLRGNIGFPGFPGDQGE
PGSPGCPGPSGMDGTRGPKGDKGESASQFGLPGPKGEPGGPGYPGRLGASGEQGLPGAQG
PGGPPGRPGPPGLSGPTGCPGSPGGPGLQGPPGEVGDPGPRGVLGDPGAPGLPGIKGKSE
GTLTPQKVLANDAPTKSFCLLVWSGVPGPPGPPGSVDLLKGEPGDCGLPGPPGLPGPPGP
PGHKGFPGCDGKHGQKGPMGFPGPQGPPGSPGPPGDKGLPGPPGRRGPLGPPGSRGEPGP
PADLDACPRIPGLPGVPGPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGP
PGHKGDMGEAGCPGAPGPPGPMGDPGPIGFGPGYLSGFLLVLHSQTDGEPTCPMGXXRLW
TGYSLLYLEGQERAHNQDLGLAGSCLPIFSTLPFAYCNIHQVCHYARRNDRSYWLASTAP
LPMTPLSEDEIRPYISRCAVCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAG
DQGGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANKYSFWLTTVRPDLQFSSAPLPD
TLKESHAQRQKISRCQVCVKHS
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atggcactggtaaggcgtcctttcaagtgcaacaagcycttggccaccaattcctggtca
ctcatacttattttgttttctgtacaatatgcatatgggggtggaaagaagtttattggt
ctctgtggaggaagagattgctctctttgccagtgctttcctgaaaagggatctcggggt
caaccgggaccrgcaggrccacagggtcctattggacccctgggaccaccgggacccact
gggatcccaggggagaaagggatgaaaggtgacagtggccgtcctggagcagcaggtgac
gtaggtgacaagggtccaaccggagttcctggatttccaggtctggatgggatacctggg
cacccagggcctcctggatccagaggcagacctggcatagatggctacaatggctcaaga
ggtgatccagggattccaggagaaagaggagctcttggcccacgagggcccccaggcctt
cctggagaaaaaggagaaaaaggaaattcagtgttcattttaggtgccactaaaggtatg
cagggcgacagaggggacccaggacctcccggctcaccaggatcaaggggagtgagaggc
ccagcaggcccagtggggtacccaggagagcccgggttagcaggacctccaggcccccct
gggagtccaggcttaaagggtaatcctggcgtgggagtaaaggggcaaatgggagacccg
ggtattaaaggaatgcctggaatgactggacttcctggaccaccgggacccaggggagag
cctggtattgggagaaaaggagagaaagggattcctgggtttccaggacctcggggggac
cctggttcctatggatctccaggttttccaggattaaagggggaaccaggactgtttgga
gatcctgggtcatttggatttcttggcccaaagggagatcctggagaccgagggcaccca
ggaccaccaggggttttggtaactccatctcttccactcaaaggccctccaggggatcca
gggcgccctggccgctatggagaaacaggggctgttggaccacgtggtcctcctggtgcc
ccaggtagaccaggggaagcctgtccaggcatgacgggacctcctgggccacgaggattt
cctggtcacccaggatttccaggggcagctggggttcctggaagagctgattctgctcca
ggcaaaccaggcaaccagggaccaactgggctgcctggagtgccgggactgccgggacct
ccgggatcagatgctgtatattgtactgttgggcaacccggaccacaaggaacaaaaggc
aaagtgggtcctccaggaagacgaggctccaaaggagaaaaagggagctcagggctctgt
gcctgccagcctggtcccatgggcccatcaggccctccagggcctcctgggaggcaaggg
agtaagggagacttggggctccctgggtggcttggagaaaaaggttccccaggccctcct
ggtgccaaaggatctccagggccaccgggaaaacctggtgcctcaggactacctggcagc
aaaggagaaaaaggtgacatggttgtatcaagagtgaaaggacacaaaggagaaagaggg
cctgatgggccccctggacttccagggcagcagggacaacacggtcgagatggatatgct
ggagaaaagggggacacagggccgcctggtgatcacgaggatgcagccccaggtgataaa
gggcctcctggaccgccagggccccctggcagagcgggacctagggggcccccaggcctg
ggatttcctggccctccaggagacagagggcaaccaggagctccaggctacccaggcaac
aggggtcctgatggtcggaagggtcggaaaggtgatacaattccttgtaacgtaacatac
cctgggaggccaggccctccaggttttgatggtcctccaggtccaaagggacttccaggt
catcggggtgctcctgggctgaggtgtttggatggacagaagggtcaacgtggcaaacca
ggaatctcagaaagaccyggtccacctggttttcgtggtgatataggagaaccaggtttg
ggaggtgaaaaggggtcctcgcctgttgggcccccaggcactccaggttcacctggagtg
aatggtcagaaaggacccccaggagatcctgctatcggctacccaggactcccgggaaag
agcggtcttccaggagcaccagggtccaaaggactcagaggcgatgccgggcgtccaggg
accgcagggccagctggcatgcccggatttccgggtctccaaggtcccaaaggccgagag
ggaaatgctgggtttccagggatcccaggcccacctggtcactcctgtgaaagaggtgct
ccagggataccagggcaaccrgggctccctggggctccaggcagtccaggtgccccaggt
tggaaaggacagcgaggggacatgggacctctgggacctgctggaatgaagggccttcct
ggagtcccaggatggccgggggcagatggaaccccaggtcttccaggggtcccaggcccc
actggagacgatgggctacctggtcttccaggcccaaagggaccccaggggctgcctggc
ttcctgggttttccaggagagagaggaaaacctggtcaggatggacaccctggcagaaag
ggagaacatggagagaagggttggcctggcttcctgggagaccgaggattgaaaggtgtc
aaaggagcaagaggacccccgggatatgaaggagaaacggatattatttccaagaagggg
gaaactggagaacctggaccttctggggatggtggattcccaggagaaaatggtgataaa
ggtcatcctgggatgcaaggaaggagaggagagccaggaagccatggaccacctggattt
caccctggggagcccggaagaaatggacagccagggcttcctggacccccaggccctcca
ggctcacctgggctgagaggaaacattggttttccaggatttccgggtgaccagggtgag
ccaggttctccagggtgcccgggaccttcaggaatggatggtacaagaggacctaaagga
gacaaaggggaatctgcaagtcagtttggcctgcctggtccaaagggtgagccgggtggc
cctggatatccaggacgtttgggagcatctggagagcagggcttgcccggtgctcaaggt
cctggaggaccacccggaaggccaggacctcctggcttgtctggaccaacaggatgtcca
ggtagtccaggggggcctgggctgcagggacccccaggagaagtgggggatcctggacca
agaggcgtcctgggggacccaggagcaccaggtcttccaggaataaaaggtaagtcagaa
ggaaccctgacccctcagaaagttctagccaatgatgctcccacaaaatctttttgccta
ctcgtgtggtcaggagtacccgggcctccaggaccacctgggagtgtcgaccttctgaaa
ggagaaccaggagactgtggtctgccagggcctccaggtctcccgggcccaccaggccct
ccaggacacaagggcttcccaggatgtgatggaaaacatggccagaaaggaccaatggga
ttcccggggccgcaggggccacctggaagtcctgggccacctggagacaaaggtttacct
ggacctccaggcagacgagggcctttgggtcctccrggttccagaggtgagcctgggccc
ccagcagacttggatgcctgcccccgaatcccagggcttcctggggtaccaggccccaga
ggaccggaaggaaccatggggcttcctggcatgagaggcccgccgggaccagggtgcaaa
ggagagcctgggctggatggcaggaggggtgaggatggcctcccagggtcccctgggcct
ccgggacataaaggtgacatgggagaagcaggctgtccaggagcaccaggccctcctggg
cccatgggggatcctgggcccatagggtttggccctggatacctcagtggcttcctcctg
gttctccacagtcagacggatggagaacccacctgccccatgggnnnnnccaggctctgg
actgggtatagtctgctatacctggaaggacaggagagagctcacaatcaagacctcggt
ctggcgggctcctgcctccccatctttagcacgctgcccttcgcctactgcaacatccac
caggtgtgccactatgcccggaggaacgacaggtcctactggctggcgagcacagcgcct
ctgcccatgactccgctctcggaggacgagatccgcccgtacatcagccgctgcgcagtg
tgcgaggcccccgcccaggccgtggcggtgcacagccaagaccagtccatccccccatgt
ccgcgggcctggaggagcctctggatcgggtactccttcctcatgcacacaggcgctggg
gaccaaggaggcgggcaggccctcatgtccccaggcagctgcctagaggatttcagagcc
gcaccgttcctggaatgccaaggccggcagggaacttgccacttttttgccaacaagtat
agtttctggctgacaacagtgagacctgacttgcagttttcctctgcaccattaccggac
accttgaaagaaagccatgctcaacgccagaaaatcagcaggtgccaggtctgcgtgaag
catagctaa
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