Bos indicus (zebu cattle): 109576401
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Entry
109576401 CDS
T04792
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04382
Cornified envelope formation
biu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109576401 (COL7A1)
09158 Development and regeneration
04382 Cornified envelope formation
109576401 (COL7A1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
DUF4992
FN3_Tor_3rd
Interfer-bind
Fndc10
Motif
Other DBs
NCBI-GeneID:
109576401
NCBI-ProteinID:
XP_019840579
UniProt:
A0A6P5DRT1
LinkDB
All DBs
Position
22:52534500..52557555
Genome browser
AA seq
2402 aa
AA seq
DB search
MRLRLLVAALCAGILAGAPRVWAQPRERVSCTRLYAADIVFLLDGSSSIGRSNFREVRGF
LEGLVLPFSGAAGAQGVRFAAVQYSDDPRTEFDLDALGSGGDVIRAIRELSYKGGNTRTG
AAXLHVADRVFLPQLARPGVPKVCILITDGKSQDMVDTAAQRLKGQGVKLFAVGIKNADP
EELKRIASZPTSDFFFFVNDFSILRTLLPLVSRRVCTTAGGVPVTLPPDDSTSGPRDLLL
EPGSQSLRVQWTAASGPVTGYKVQYAPLTGLGQPLPSELREVSVPAGETSVQLQGLRPLT
EYQVTVVALYANSIGEAVSGTARTTALEGPEVTIQNTTAHSLLVAWQSVPGATGYRVTWR
VVRGGATQQQELGSGQGSVLLRDLQPGTDYEVTVSALLGRSVGPATSLTARTDTSVEQTL
RPVILGPTSILLSWNLVPEARGYRLEWRRESGLEVPQKVVLPSDVTRYQLDGLQPGTEYR
LTLYTLLEGREVATPATVVPTELPVGPVTALQATELPGQRVRVSWSPVPGATEYRITVRS
AQGVERSLVLPGSQTAFDLDDVRAGLSYTVRVSARVGGREGAASILTVRREPEPPLAIPG
LRVMASDATRVRVAWGPVPGASGFRISWRTDNGLESSQTVPSDSTATDIVGLRPGTSYQV
AVSALRGREEGPPAVIVARTDPLGPVRSVHVTRVSSSSVTITWNRVPGATGYRVSWRSGR
GPEKSQLVSGEATVAELDGLEPDTEYTVRVWARVAGVDGTPASAVVRTDPRPVGSVSKLQ
IHNASSDVLRVTWVGVPGATAYRLAWGRSEGGPTRQQILPGNTDSAEIRGLEGGVSYSVR
VTALIGDREGAPVSIVVTTPPEAPPALETLRVEQRGEHSLRLHWQPVPGARGFRLRWRPE
GGQEQSRVLGPEVSSYDLDGLEPATHYRIWLSVLGTAGEGPPSEVTAYTESPRXPSTQLR
VVDTSVDSVTLAWTPVSGVSSYILSWRPLRGPGQELPGASQTLPGTSSSQRVTGLELGIS
YLFSLTPVRBGVRGPEASITQSPACPRGLMDVVFLVHATRDNAHRSEAVKRALEHLVSAL
GPLGPQAVQVGLLSYSHRPSPLLSLNSSHDLGVILQKIRNIPYTDPSGNNLGTAVVTAHR
YLLAPDAPGRRRHVPGVMVLLVDEPLRGDIFNSIREAQAAGLRVMMLGLAGADPEQLRRL
VPGMDPSQTFFAVDDGLSLERAVSSLAAALCQTALTTQPQPEPCSVHCPKGQKGEPGQMG
LKGQAGPPGPPGLPGRIGAPGPQGPPGSASAKGERGFPGADGPPGSPGRPGTPGAPGPKG
SPGWAGPRGEPGERGPRGPKGEPGEPGQVIGGEGPGLPGQKGDPGPPGPPGSRGPLGDPG
PRGPPGFPGTAVKGEKGDRGEQGPPGPGDGTAALGEPGLPGLPGSPGPQGSVGPPGEKGE
KGDCEDGAPGLPGQPGIPGERGLRGLPGDAGPKGDRGLTGAAGEKGERGSPGPVGPQGLP
GVAGRPGPEGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGDMGPPGPKGATGF
KGEQGSPGLALPGDPGPKGDPGGRGPIGLTGRAGPPGDSGPPGEKGDPGRPGSPGPVGPR
GRDGEVGEKGDDGPPGDPGLPGKAGERGLRGAPGARGPVGEKGDQGDPGEEGRNGSPGPS
GPKGDRGEPGPPGAPGRLVDVGLGAGEKGEPGDRGQEGPRGPKGDPGPPGASGERGVSGL
RGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGASGPPGPNGAMGKAGDPGRDGL
PGLRGEQGPPGPAGPPGAPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGR
DGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGVPGSSGPKGDRGETGPRGEQGLPGER
GLRGEPGSLVNAERLLENIGIKTSAXREIVETWEESSGGFLPTPERRRGPKGDPGERGPP
GKEGPIGFSGERGPKGDRGDPGPQGPPGLALGERGLPGPTGLAGEPGKPGIPGLPGPAGS
VGEAGRPGERGERGEKGERGEQGRDGLPGLPGPPGPPGPKVAVDEPGSGLSREQGPPGFK
GAKGDPGSDGDRGPKGDRGEPGIKGDRGEPGQRGPNGSPGLPGERGVAGPEGKPGLQGPR
GTPGPAGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPTGAVGLPGPPG
PSGLVGPQGAPGLPGQVGETGKPGAPGRDGATGKDGDRGAPGVPGSPGLPGPVGPKGEPG
PMGTPGQAVVGPPGAKGEKGAPGALAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDP
GEDVSLGSGRVRVXVEECSRAREGTFPGLGTSELEPGRTFQHSGSCSRSTRGSNILACTC
SS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcggctcctggtggctgcgctctgcgccgggatcctggcaggggctccccga
gtgtgggcccagcccagggagagagtgagctgcacgcgcctctacgccgctgacatcgtg
ttcctccttgacggctcctcgtccatcggccgaagcaacttccgcgaagtgcggggtttc
cttgaggggctggtgctgcccttctccggggcagctggggcacagggtgtgcgcttcgcg
gccgtgcagtacagcgacgacccacggacagaatttgacctggatgcacttggctcaggc
ggagatgtgatccgtgccatccgagagctcagctayaaggggggcaacacgcgcacaggg
gccgcgrttctccacgtggcygaccgcgtcttcctgccccagctggcccgacctggtgtc
cccaaggtctgtatcctcatcacagacgggaagtcccaggacatggtggacacagctgcc
cagaggttgaaggggcagggagtcaagctgtttgctgtgggcatcaagaacgccgacccc
gaggagctgaagcgaattgcctcasagccgactagcgatttcttcttcttcgtcaatgac
ttcagcatcttgaggacgctcctgcctctggtttcccggagggtgtgcacaactgcgggt
ggtgtgcccgtgaccctgccccccgacgactcgacctctggtccacgagacctgctgctt
gagccrggcagtcagtccttgagagtccagtggacagcggccagtggccccgtgactggc
tacaaggtccagtacgcacccctgacagggctgggacagccattgccmagcgagctgcgg
gaggtgagcgtcccagctggtgagaccagcgtgcagctgcagggtctccggccactgact
gagtaccaagtgacggtggtcgccctctacgccaacagcatcggggaggccgtgagcggg
accgctaggaccactgctctggaggggccagaagtgaccatccagaacaccacagcccac
agcctcctggtggcctggcagagtgtgccaggtgccactggctaccgggtgacgtggcgg
gtcgtcaggggtggggccacacagcagcaggagctgggctctgggcaggggtcagtgttg
ctgagggacctgcagcctggcaccgactacgaggtgaccgtgagtgccctgcttggccgg
agcgtggggccagccacctccctgactgcccgcactgacacgtccgtcgagcagaccctg
cgtcctgtcatcctgggccccacgtccatcctcctctcctggaacctggtgcctgaggcc
cgtggctaccggctggaatggcggcgtgagagcggcttagaggtgccacagaaggtggtg
ctgccctctgacgtgacccgctaccagttggatgggctgcagccaggcaccgagtaccgc
ctcactctctacacgctgctagagggccgtgaggtggccaccccagcgaccgtggtcccc
actgagctgcccgtgggccccgtcacagccctccaggccaccgagctgcctgggcagcgt
gtgcgagtgtcctggagcccagtycccggcgccaccgagtatcgcatcactgtgcgcagc
gcccagggggttgagcggagcctggtgcttcctgggagtcagacggcctttgacttggat
gacgtccgggctgggctcagctacacagtgcgggtgtcagcgcgagtaggcggccgggag
ggcgctgccagcatcctcactgtccgccgggagccagaacccccactggccatcccaggg
ctgcgggtcatggcatcggacgcaacgcgagtgagggtggcctggggaccagttcccgga
gccagcggatttcggattagctggaggacagacaatggtctggagtccagccagacagtt
ccttcagactctactgccaccgacattgtggggctgagacctgggacctcctaccaggtg
gccgtgtcggcgctgcgaggaagagaggagggccctcctgcggtcatcgtggctcgaacc
gatcccttgggcccagtgagatcggtccatgtgactcgagtcagcagctcatctgtcacc
atcacctggaaccgggttcctggtgccacagggtacagggtctcctggcgctcaggccga
ggcccagagaaatcccagttggtttctggggaggccacggtggccgagctggatggactg
gagccagatactgagtacaccgtgcgtgtgtgggcccgtgtggctggtgtggacgggacg
cctgcctctgcggttgtgagaactgaccctcggcccgtgggcagtgtgtcgaagctgcag
atccataatgcttccagtgacgttctgcgggtcacctgggtgggggtccctggagccaca
gcctacagactggcctggggccggagtgagggtggccccacaagacagcagattctccca
ggaaacacggactccgcagaaatacggggcctcgaaggcggagtcagttattcagtgaga
gtgaccgcactcataggggaccgcgagggcgcgcctgtctccattgtcgtcaccacccct
ccggaggctcctccagccctggagacacttcgcgtggagcagcgaggggagcactcactg
aggctgcactggcagccggtgcctggtgcacgcggcttccgtctgcgttggcgacctgag
ggtggccaggaacagtcccgagtcctggggccggaagtcagcagctatgacctggatggg
ctggagccagcgacccactaccgcatatggctgagcgtcttggggacggctggagaaggg
cccccctcggaagtgactgcatacactgagtcacctcgtgycccaagcactcaactgcgt
gtggtggacacgtcagtcgactcagtgactctggcctggaccccagtgtctggggtatcc
agctacatcctatcctggcggcctctcagaggccctggccaagaactgcctggggcctca
cagacacttccggggacctcaagttcccagcgggtgacaggcctagagctgggcatctcc
tacctcttctccctaactcctgtccggracggtgtacgcggtcctgaagcctctatcaca
cagagcccagcgtgtccccgcggcctgatggatgtggtgttcctggtgcacgccactcga
gacaatgctcatcgctcggaggctgtgaagcgagccctggagcacctggtgtctgcactc
gggcctctcgggccacaggccgtccaggtcggcctcctgtcctacagtcaccggccctcc
ccactgttgtcgctgaacagctcccatgaccttggcgtcatcctgcagaagatccgcaac
atcccctacacggacccaagtgggaacaacctgggcacagccgtggttacagcccacaga
tacctgctggcaccagatgcgcctggacgccgccggcatgtgccgggggtgatggttctc
ctggtggatgagcccttgagaggtgacatcttcaactctatccgtgaggcccaggctgct
gggctcagagtgatgatgctggggctggcgggagctgacccagagcagctgcgtcgcttg
gtgcctggcatggacccttcccagaccttcttcgctgtggatgatggtctgagcttggag
cgggccgtcagtagtctggcagcagccctgtgtcagacagccttgaccacrcagccacag
ccagagccttgctcagtgcattgtccaaagggccagaagggggaacccggacagatgggc
ctgaaaggacaagccgggcctcctggcccccccggcctcccgggcaggattggtgctcct
ggcccccagggacctcctggaagtgcttctgcgaagggcgagaggggcttccctggggca
gatgggcctccaggcagccctggccgccctgggactcctggagcccctggtccgaagggc
tccccagggtgggccggccctcgtggagaaccaggagagcgaggacctcgaggcccaaag
ggggagccgggagagcctggacaagtcattggaggcgagggcccagggcttcctgggcag
aaaggggaccctggacctccaggtccccctggatctcgtgggccgttgggggacccggga
ccccggggtcccccgggatttcctggaacagctgtgaagggtgagaaaggcgatcgtggg
gagcagggcccccctggaccaggtgacggcactgctgctctgggcgagcctgggctgccg
ggtcttcctggaagccccggaccccaaggctcagttggcccccctggagagaaaggagaa
aagggtgactgtgaagatggagccccgggcctcccaggacaacccggaattccgggtgag
cggggccttcggggacttcctggagatgctggccccaaaggcgaccgaggactaacaggg
gccgctggagagaagggtgaacgtggatcgcctggcccagtgggaccacaggggctgcca
ggagttgctggacgacctgggcccgagggtcctgaagggccaccaggaccgaccggccgc
cgaggagagaagggggagcctggtcgkcctggagaccctgcagtgggacctgggggtgct
ggagctaaaggagagaagggagatatgggcccccccgggcccaaaggagctaccggattc
aaaggggaacagggctcacctggcttggctcttcctggagaccctggccccaagggagac
cctggaggccgaggtcccattggcctcactggcagagcaggacccccgggcgactcagga
ccccctggagagaagggagaccctgggcggcccggttccccaggacccgtcggcccccga
ggacgagacggtgaagttggagagaagggcgatgacggtcccccgggtgacccaggtttg
cctggaaaagctggcgagcgtggccttcggggagcgcctggagctcgggggcctgtgggt
gagaagggagaccagggagatcctggagaggaaggacgaaatgggagccctggaccgtct
ggacccaagggtgaccgtggggagccaggtcccccaggagcccctggacggctggtggac
gtgggacttggagccggagagaagggagagcctggggaccgaggacaggagggtccacga
ggacccaagggcgaccctggcccccctggagcttctggggagaggggcgtcagtggactt
cgggggcctccaggcccacagggggacccaggtgttcgaggcccagcaggagaaaagggc
gaccggggccctcctggcctggatggccgcagtgggctggatgggaaaccgggagcctct
ggtccccctgggccgaatggtgccatgggcaaggccggagacccagggagagacggactt
ccgggccttcgaggagaacagggcccccctggccctgctggtccccccggagcaccggga
aagccgggcgaggatggcaagcctggcctgaatgggaaaaacggagaacccggggaccct
ggagaagacgggaggaagggagagaarggagattcaggcgcccctgggagagaaggtcgt
gacggccccaagggtgagcgtggagctcctggtagccctggactccagggccccccgggc
ctcccagggcaggtcggccctcccgggcagggcttccctggcgtcccggggagttcaggc
cccaagggtgaccgtggggagactggacccagaggggagcagggcctcccaggagagcgt
ggcctgagaggagagcctgggagcctggtgaatgcagagcggttgctggaaaatattggc
atcaagacatctgccmtgmgggagatcgtggagacctgggaagaaagctctggtggcttc
ctgcccacrcctgaacggcgtcgcggccccaagggggacccaggcgagcggggcccccca
ggcaaggagggccccatcggcttttctggagaacgtggaccaaagggagatcgtggagac
cccggccctcaggggccacctggcctggccctgggggagaggggccttcctggacctacc
ggccttgccggggagcctgggaagcctggtatccctgggctccctggcccagctgggagt
gtgggggaggccggaagacccggagagaggggagaacggggagagaaaggagaacgtgga
gaacagggcagagacggccttcctggcctccctggaccccccggacccccaggccccaag
gtggccgtggacgagccaggttctgggctctctagagaacaaggaccccctggattcaag
ggtgctaagggggatccaggcagtgatggcgaccgaggccccaaaggagacaggggtgag
ccrggcatcaagggcgaccggggagagcctggacagaggggtccgaatggcagcccgggt
ctgccaggagagcgcggcgtggctgggcccgaggggaagccgggtctgcaaggtccacgg
gggacccctggcccggcgggcggccatggagaccctggaccacccggggccccgggtctt
gctggccctgcgggaccccagggaccttctggcctaaagggggagcccggagagacagga
ccaccaggacggggcctgcctggacctactggagccgtgggacttcccgggccccctggc
ccttcaggcctggtgggtcctcaaggggcaccgggtttgcctggacaagtgggggagacg
ggaaagccgggagcgccaggtcgtgatggtgccactgggaaagatggagacagaggagcc
cccggtgtgccggggtcaccaggtctgccrggccctgtcggacctaaaggagagccggga
cccatggggacccctggacaggctgtggtcgggccccctggagcaaagggagagaagggc
gcccctggagcccttgctggagacctggtgggagagccgggagccaagggtgaccgagga
ctgccrgggccgcggggcgagaagggtgaagctggccgtgcgggggagcctggagaccct
ggcgaagatgtgagtctggggtccgggcgagtccgagtcyaggttgaggagtgtagtcgt
gcacgtgagggaacattcccggggctgggcacctctgaacttgagcctggccgaacgttc
cagcactcggggtcctgctcccggagcacacgggggtcgaatatcctggcttgcacgtgc
tcctcctag
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