Bos indicus (zebu cattle): 109576931
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Entry
109576931 CDS
T04792
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109576931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109576931
Enzymes [BR:
biu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109576931
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109576931
mRNA degradation factors
3'-5' decay
Ski complex
109576931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
109576931
NCBI-ProteinID:
XP_019841134
UniProt:
A0A6P5DTB0
LinkDB
All DBs
Position
23:complement(27146142..27156142)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAER
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSSTTSLSLRRPPAPISQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTLPPGFKKGVDFAPKGHSAPAAGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRQD
TVSASPGSVPLARASSLEDLVLKEAATTVAPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKKLGALEEPEVTGQLVDLPEYYSWGEELTETRSQIQHRIIESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSNSTSRVFTALVLCDKPVSEDPRERGPASPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRLNGDKILEDFSKRQQPKFKKDPPSAA
VTTAVQELLRLAQAHPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRT
VAKRIGEVQAACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggacctgccccttcgg
gccgtagagctgggatgcactgggcgctgggagttgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaggaagcagagcgg
ttgtttctgtcatctccagcctggctgcctctgcatggtgtggagcactcagcccggaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcgtccacaacctccttgtctcttcgccggccaccagcgccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccagtataacagatctgagcactcgtgaggaggctgaggaggagatagactttgag
aaagacctccttactcttccacctggcttcaagaaaggcgtggacttcgcaccaaagggt
cactcagctccagctgccgggttgctcagcctcagccgtctgctggagcccttggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagcctggcgggcccagacaggac
actgtttcagcctctcctggcagtgttcctctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcggccacaactgtagcccccccagaacctcccaagcccccacctcag
gagcagtgggccattcctgtggatgttacctcccctgttggtgatttctaccgcctcatt
ccccagccagcctttcagtgggcctttgagccagatgtgtttcagaaacaggccatcctg
cacttggagcggcacgactcagtcttcgtcgcggctcacacatccgcggggaagacggtt
gtggctgaatatgccatcgcgcttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacgtttggggacgtg
gggctgctcaccggggatgtgcagctgcacccagaagcctcgtgcctcattatgacaacg
gagatccttcgctccatgctgtacagtggctcggacgtcatccgggacctggagtgggtt
atctttgatgaggttcactatatcaatgatgctgagcgcggggtcgtgtgggaggaggta
ctcatcatgctgcctgaccacgtgtccatcatccttctgagtgctactgtccccaatgcc
cttgagtttgctgactggattggacggctgaagcgtcgccagatctacgtgatcagcact
gtcgctcgcccagtgcccctggagcactatctcttcacrgggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgtggcgccttccacacaaaggggtactatgcg
gctgtggaggccaagaaggagcggatgagcaagcatgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcccaggaccgcggtgtgtacctgtccctcctggcctcc
ctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccggggccgctgtgac
gagcaggcctcrggcctcacctccctcgacctgacracaagttcagagaagagtgagatt
cacctcttcctacagcgctgccttgcccgtctccgcggttctgaccgccagctgccccag
gttctgcacatgtcggagctcctgcaccgtggcctgggtgtgcaccacagcggcatcctg
cccatcctcaaggagattgtggagatgctcttcagccgcggcctggtcaaggtcttgttt
gccacggagaccttcgccatgggtgtaaatatgccrgcccggacagtggtatttgactcc
atgcgcaagcacgatggctccaccttccgggacctactccctggggagtatgtgcagatg
gcgggccgggcgggccggaggggcctggaccccacaggcacggtcatcctgctctgcaag
ggccgcgtgcccgagatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacttgctgcgggtggatgctctc
agggtggaggacatgatgaagaggagcttctcagagtttccatctcgcaaggacagcaag
gcccatgaacaggctctggctgaactgaccaagaagttgggagctttggaagagcccgag
gtgactggccagctcgtcgacttgcctgagtactacagctggggggaggaactgactgag
acccggagccagatccagcaccgcatcatagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtggttgtgaagaatcaggagcatcacaacgcactgggtgtgatcctt
caggtctcttcgaactccaccagcagagtattcacagccctggtcttgtgtgacaagccc
gtgtctgaggacccacgggagagggggccagcctccccagacgtgccctacccagacgac
ctcgtgggattcaagctgttcctgcctgaggggccctgtgaccacactgtggccaagctc
cagccaggagacgtggccgccatcaccaccaaggtgctccggctaaatggggacaagatc
ttggaggacttcagcaagcggcagcaaccaaaattcaagaaggatccgccctctgcggcc
gtgaccactgctgtccaggaactgctacgactggctcaggcgcaccccacaggacccccc
accctcgaccctgtcaatgacctgcaactcaaggatgtgtctgtggtcgagggggggctc
cgggcccggaagctggaggagctgatccggggggctcagtgtgtgcacagtccccgtttc
cctgcccagtacctgaagctgcgggagmggatgcagatccagaaggagatggagcggctg
cgcttcctgctgtcggaccagtcgctgctgctgctcccggagtaccaccagcgagtagag
gtgctgcgaaccctggggtatgtggacgaggcaggcacagtgaagctggccgggcgggtg
gcttgtgccatgagcagccacgagctgctcctcaccgagctcatgttcgacaacgcactg
agcaccctgcggcctgaggagatcgctgccctgctctccggcctggtctgccagagcccc
ggggaccctggtgatcagctccccagcaccctcaaacagggggtggaacgggtccggact
gtggccaagcggattggtgaggtccaggcggcctgtggtttgaaccagactgtggaggaa
tttgttggggagctgaatttcgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcagggacccctgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcgcttcggggggcagcccgcctggtgggcgaacct
gtgctaggtgccaagatggagacggcagccaccctgttacggagggacatcgtctttgct
gccagcctctacacccagtga
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