Bos indicus (zebu cattle): 109578580
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Entry
109578580 CDS
T04792
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109578580 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109578580 (PARN)
Enzymes [BR:
biu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109578580 (PARN)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109578580 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Thc1_RRM
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
109578580
NCBI-ProteinID:
XP_019843490
UniProt:
A0A6P5E292
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All DBs
Position
25:complement(14445244..14624872)
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKSHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVPIAVNTSKYAESYRIQTYADYVGKKREEKQMKRKWTEDSWKEVEPKRLN
TQCGSYSLQNHHYHANSLTATSTVGKRNLSPSRAEAGLEARAXGEISDTELEQTDPCAEP
LSEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggcmgacttcttcgccatcgatggggagttctcaggaatcagcgatggaccttcagtc
accgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccgtacttaaaccaggaagaagaaaga
cagttaagagagcagtatgatgagaagcgttcacagtccaacggtgcaggtgctctgtcc
tacacgtctcccaacacttcraagtgtcccgtgacaattcctgacgatcagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactgatatatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaaccgaaaagaaagagcgatatattgtt
atcagcaaagtagatgaagaagaacggaaaagaagagagcaacagaaacatgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgctaattcg
gggaagcttgtcattggacacaacatgctcttggatgtcatgcacacggttcatcagttc
tactgccctctgcctgcggacttaaatgaatttaaggagatgacaacatgtgttttcccc
aggctcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggctttccaagttatgacacggcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactgtgtttcatctccatggccaactacctaggttctttt
cttagtcctccaaagagtcatgtgtctgccagatcaaaactcatcgaacctttttttaac
aagttgtttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcacgtcctccacgtgacattccccaaagaatggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcttggattgatgacacatca
gcatttgtttctctcagccaacctgaacaagtgccgattgctgtcaataccagcaagtat
gcagagagctatcgcatccagacctaygctgactatgtcgggaaaaaacgagaggagaag
cagatgaagagaaagtggacagaagatagttggaaggaggttgagccaaagcggctaaac
acgcagtgtggctcctacagtttgcagaatcaccattaccacgccaacagtctcacagcc
accagcacagtaggaaagagaaacctgagtcccagtcgagcagaagccggcctggaggcc
cgagcatygggggagatttctgacactgagcttgagcagacagatccctgtgcagaaccc
ctctcagagggaaggaaaaaggccaagaaactaaaaaggatgaagaaggacctttctcca
acaggaagcatctcagacagctcggccaagctcttcgaagtccccgacacatggtaa
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