Brenneria izadpanahii: HC231_03875
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Entry
HC231_03875 CDS
T07407
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
biz
Brenneria izadpanahii
Pathway
biz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HC231_03875 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
biz03400
]
HC231_03875 (uvrA)
DNA repair and recombination proteins [BR:
biz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HC231_03875 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HC231_03875 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_23
AAA_25
nSTAND3
NACHT
Viral_helicase1
cobW
T2SSE
ExoX-like_C
DUF2064
Motif
Other DBs
NCBI-ProteinID:
QTF07162
LinkDB
All DBs
Position
874816..877653
Genome browser
AA seq
945 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARIGEPRC
PEHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLAQRLAESFETALELSGGSAVVADMDDP
TVPELLFSANFACPICGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPARVVQNGEL
SLAGGAIRGWDRRNFYYFQMLRSLADHYKFDVDAPFDSLSESVQKLILYGSGKENIEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCGGTRLREEARH
VYVEQTTLPEISDMSIGHAMDFFRNMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRDLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAQGTMEQIMAVPESLTGQFLCGVRKIEV
PEHRVPADPTKVLKLIGARGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPLAQR
QLNGATLAEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKSIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVAGTPETVAECEQSHTARFLKPMLARQPA
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggataatatcgaagttcgtggtgcccgtactcataatctcaagaatatcaatctgata
atccctcgcgacaagctgatagtgatcacgggattatccggttcaggcaaatcatcgctg
gcatttgacaccttatatgccgaggggcaacggcgttacgttgaatcgctctcggcctat
gcccgtcagtttttatcgctgatggagaagccggacgttgatcatatcgaagggttgtcg
cctgccatttccattgagcagaaatcaacctcccataacccgcgttccaccgtcggcacg
atcactgaaattcatgattacctgcgtttgctgtttgcccgcatcggtgagccccgctgt
cctgagcacgatgttccgctggatgcccagacggtcagccagatggtggataacgtgctg
gcgcagccggaaggcaagcggttgatgctgctggcgccgattgtgaaggatcgtaagggc
gagcacagcaagacgctggaaaatctggccacgcagggctatatccgtgcgcgtattgac
ggcgaagtgtgcgatctttccgatccgccgaagctggaattgcagaaaaaacataccatt
gaagtcgttatcgaccgttttaaagtgcgggacgatctggctcagaggctggcggaatcg
tttgaaacggcgctggaattatccggcggcagtgcggtggtggccgatatggacgatccg
accgtgcctgaactgctgttctccgcgaatttcgcctgtccgatatgcggttacagcatg
catgagctggagccgcgcatgttctcgttcaataacccggccggcgcctgtccgagctgc
gatggcctgggggttcagcagtttttcgatcctgccagggtagtgcagaacggagagtta
tccctggccggtggcgccattcgcggctgggatcgccgtaatttctactatttccagatg
ctgcgctcgctggcggatcactacaaattcgatgtcgatgcgccgttcgacagcctgagc
gaatctgtgcagaagctgattctgtatggttcaggtaaggaaaacatcgagtttaaatat
atcaacgatcggggggacacctcggtgcgccgtcacccgttcgaaggggtgctgcataac
atggagcgccgttacaaagagacggaatctagcgcggtgcgcgaagaactggcgaaattt
atcagcaatcgtccttgcgccagctgcggcggcacgcgtttgcgtgaggaagcgcgccac
gtgtatgtcgaacagacgacgctgccggaaatttccgatatgagcatcggccatgcgatg
gatttctttcggaatatgaagctcagcggccagcgggccaaaatagccgaaaaagtattg
aaagagatcggcgatcggctgaagtttttggtcaatgtcgggctgaattatctgtcgctg
tcgcgttccgcggaaacgctgtccggcggcgaggcccagcgtatccgcctggcaagccag
attggggccggattggtcggggtgatgtacgtgctggatgaaccctctatcgggctgcat
cagcgtgacaatgaacgcctgctggaaacgctgatccatctgcgcgatctgggaaatacc
gtgatcgtggttgaacatgacgaagatgcgattcgcgccgccgaccatgttatcgatatc
ggccccggcgcgggagtgcacggtggtcaggtggtcgcgcaggggacgatggaacagatt
atggcggtgccggaatcgttgaccggtcagttcctctgcggagtgcgcaagattgaggtt
cccgaacatcgcgtaccggccgatccaaccaaagtgctgaagctgattggcgccaggggc
aacaacctgaaagacgttacgctgacgctgccggtggggctgtttacctgtgtgaccggc
gtctccggatcggggaaatccacgctgattaacgacaccttattcccgctggctcagcgc
cagcttaacggcgctacgctggccgagccggccgcctaccgtgatatccaggggctggag
catttcgataaggtgatcgatatcgatcaaagcccgattggccgcacgccgcgttctaac
ccggcgacctataccggtatctttaccccgattcgtgaactgttcgccggcgtaccggaa
tcacgcgcccgcggctataacccgggacgtttcagctttaacgtgcgcggggggcgttgt
gaagcctgtcagggggacggcgtgattaaagtcgaaatgcactttttgccggatatttat
gtgccgtgcgatcaatgtaaagggaagcgctataaccgcgagacgctggaaatcaagtat
aaaggcaagagcattcatgaagtgctggatatgaccatcgaagaagcccgcgaattcttt
gatgcgattccggcgttggcgcgcaaactgcaaaccctgatcgatgtcggcctgtcctat
attcgtttgggacaatcggcgacgacgctgtccggcggcgaagcgcaacgcgtgaagctg
gcgcgtgaactgtcgaaacggggcaccgggcagacgctgtatattctggatgaacccacc
accggtttgcactttgccgatattcagcagttgctggcggttttgcatcaactgcgcgat
cagggcaataccattgtggttatcgaacataatctggatgtgattaaaacggcggactgg
attgtcgacctggggccggaaggcggcagcggcggcggtgaaattctggtggccggtacg
ccggaaacggttgccgaatgtgagcagtcacatacggcgcgttttctgaagccgatgctg
gcgcgtcagccagcgtaa
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