Brenneria izadpanahii: HC231_04235
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Entry
HC231_04235 CDS
T07407
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
biz
Brenneria izadpanahii
Pathway
biz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC231_04235 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biz03019
]
HC231_04235 (rnr)
03016 Transfer RNA biogenesis [BR:
biz03016
]
HC231_04235 (rnr)
Enzymes [BR:
biz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HC231_04235 (rnr)
Messenger RNA biogenesis [BR:
biz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HC231_04235 (rnr)
Transfer RNA biogenesis [BR:
biz03016
]
Prokaryotic type
tRNA degradation factors
HC231_04235 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QTF07227
UniProt:
A0ABX7URP1
LinkDB
All DBs
Position
960909..963371
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AA seq
820 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPIKREELAADLQLTSDEQLEALRRRLR
AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGYGFLRVEGRKDDLYLSAEEMKRAIH
GDVVLAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK
EDINGARMGSVVVVELTQRATRRTKAVGKIVEVLGDTMGTSLAVDIALRTHDIPHTWPPK
VEEQVKDLAEEVPEEAKKGRIDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGKLSSYKFYEGLMSSHARLTYTKVWSILQGDAELRERYKPLVGGLEELHRMYKVLDQA
REIRGGIAFETEEAKFIFNAERRIERVESVVRNDAHKLIEECMILANISAAKFVEKNEEP
ALFRVHDRPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAALMVEVADRPDSEMLQTMLL
RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLALHRSIKYLLSSRKERWTPTGGWH
SDMNEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIISSVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LVSSARKPRGEGKTARERAKKADNREAKPARRRRNAAKPAANFEPDSSFRKEGDRKAKPA
AGKSKPKKNADKAKKNAEKTRKIAAATKAKRGKKKPSAES
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagacccattcctggaacgagaagcagaaaaatacgagtctcccattcctagc
cgtgaatatattctggcccatattgccaaacgagataccccgattaagcgggaagaactg
gcggccgatctacagttaaccagcgatgagcaactcgaagcgctgcgccgccgtctgcgg
gcgatggaacgcgacggccaattgatttttacccgccgccaatgctacgccctgccggaa
aaactggatttgctgcgcggtacggtgatcggccaccgcgacggctatggctttctgcgc
gtggagggccgcaaagacgacctttatctgtccgcggaagagatgaaacgcgccattcat
ggcgatgtggtgctggcccagccgctgggcgccgaccgcaaagggcggcgggaaggccgt
atcgtccgcgtgctggaaccgcgtaccgggcagatcgtcgggcgctattttgtcgatgcc
ggcgtcggtttcgtcgtcccggacgatagccgtctcagtttcgacattttgattccgaaa
gaagatatcaacggcgcccggatgggctccgtggtggtggtggaactgactcaacgcgcc
acgcgccggacgaaagcggtggggaaaatcgttgaggtgctgggcgataccatgggaacc
agcctggcggtggatatcgccctgcgtacccatgatattccgcacacctggccgccgaaa
gtggaagaacaggtgaaggatctggcggaagaggtgccggaagaggcgaaaaaaggccgc
attgacttacgcaaattgccgttggtgaccattgacggcgaagacgcgcgtgattttgat
gatgcggtgtactgcgagaagaaacgcggcggcggctggcggctgtgggtggcgattgcg
gacgtcagctattatgtgcgtccgaatacgccgctggatcacgaagcgcgcgcgcgcggt
acgtcggtctatttcccgtcgcaggtggtgccgatgctgccggaagtgctgtctaacggg
ctctgttcgcttaacccgcaggtcgaccgtctgtgtatggtgtgcgagatgaccgtttcg
gcgcagggaaaactctcctcatataaattttatgaagggctgatgagctcacatgctcgt
ctgacctataccaaagtgtggagtattcttcagggcgacgccgaactgcgcgagcgctat
aagccgctggtgggcgggctggaagagctgcaccggatgtacaaggtgctggaccaggcg
cgcgaaattcgcggcggcatcgcctttgaaacggaagaagccaaattcattttcaacgcc
gagcgccgcattgaacgggttgaatccgtggtgcgcaacgatgcgcataagctgattgaa
gagtgcatgattctggcgaatatttccgcggcgaaattcgtggagaaaaatgaggagccg
gcgttattccgcgtccacgatcggccaagcgaagatcatgttctggccttgcgcagcgtg
ctgggcgaactggggctgacgttgaaaggcggtatgaagccgcagcctaaagattatgcc
gcgttaatggtggaagtcgccgatcgtcccgacagcgaaatgctgcaaaccatgctgctg
cgctcgatgaagcaggcggtctacgatccggaaaaccgcggccactttggtctggcgctc
gcttcctacggccactttacttcgcctatccgccgctatccggatttggctttgcaccgc
tcgatcaagtatctgctgagttcccgtaaagaacgctggacgccgaccggcggctggcac
agcgatatgaacgagatgctgcaactggggatgcactgttcgatgacggaacgccgggcc
gatgaagcgacccgtgacgtggccgactggctgaaatgcgactttatgcaggatcacgtc
ggtgaagtgttcaccgggattatctccagcgtgaccggtttcgggttctttgtgcgtctc
aacgatctgtttatcgacgggctggtgcatgtctccacgctggataatgactactatcgt
tacgataatatcggtcaacgtctgatcggcgagtcgcgcggtcaggtttatcgcctgggc
gatgaagtggaaattcgtgttgaagccgttcatatggacgaacgtaatatcgatttcgcg
ctggtttccagcgcgcgcaaaccgcgcggcgagggtaagacggcgcgcgaacgggcgaag
aaagcggataaccgggaggccaaaccggctcgccgccgccgtaacgccgctaagccggcg
gcgaatttcgaaccggattcctccttccgtaaagagggcgatcgtaaagccaaaccggcc
gccggcaaatccaagccgaaaaagaacgctgataaagccaaaaagaacgccgagaaaacg
cgtaagattgcggcggccaccaaagccaaacgcgggaagaagaagccgtccgccgagtca
taa
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