Brenneria izadpanahii: HC231_13385
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Entry
HC231_13385 CDS
T07407
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
biz
Brenneria izadpanahii
Pathway
biz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HC231_13385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
biz03400
]
HC231_13385 (mfd)
Enzymes [BR:
biz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HC231_13385 (mfd)
DNA repair and recombination proteins [BR:
biz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HC231_13385 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QTF08785
LinkDB
All DBs
Position
2988790..2992239
Genome browser
AA seq
1149 aa
AA seq
DB search
MPEKYRYSLPLKPGEQRLLGQLTGAACAVECAEIIDRHAGLVILIAPDMQNALRLHDEIR
QFTEQPVTTLPDWETLPYDSFSPHQEIISTRLATLYQLPLMERGVLILPVNTLMQRVCPH
NFLHGHALMLKKGQRLSRDKLRTQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSDEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVPLVNLLPAHEFPTDKNAIELFRSQWREQFEVRRD
AEHIYQQVSKSAWPAGIEYWQPLFFNQPLPPLFSYFPDHTLVVNTGDIEQGAERFWLDIQ
QRFESRRVDPMRPLLPPESLWLRVDNLFSELKKWPRIQLRTDTLPKKAANENLGYQPLPD
LAIQHQQKAPLDPLRRFVEQFDGQVIFSVESEGRRETLQELLARIKLKPTPINSLEQAQK
RGAYLMIGASEHGFIDTISQRALICESDLLGERVNRRRQDNRRAINADTLIRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDVYAQRAAKSGFAFKHDKEQYQHFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPIKIEMISRFRSAREQTQILDETREGKVDILIGTHKLLQNDVHW
RDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDELVVREAILREILRGGQVYYLYNDVENIEKATRRLSELVPEARITI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSGDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMATVGFSLYMELLESAVDALKAGREPSLEDLISSQTEVELRLPALLPDDYIPDV
NTRLSFYKRIASAKQPNELEELKVELIDRFGLLPDAARHLLQVAALRQQAQALGIKRIEG
HEKGGFIEFSEQNRVDPTHLIGLLQQNPGTYRLDGPTRLKFITDLSARPQRIEFIQSLLT
NMARHTLAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaataccgttattcgttgccgcttaaaccgggcgagcaacgcctgctggga
caactgaccggcgcggcctgcgccgtggaatgtgcggaaattatcgatcgccatgccgga
ctggtcattcttatcgcccccgatatgcaaaatgctttacgtctgcacgatgaaattcgg
caatttacggaacaacccgtcacgactttgcctgactgggaaacgctgccttacgacagc
ttttctcctcatcaggaaattatttccacccggctcgccacgctgtaccagttaccgtta
atggaacgcggcgtgctgatcctgccggtcaacacgctgatgcagcgggtatgtccgcac
aattttttgcacggtcatgccttgatgctgaaaaaaggccagcggctgtcgcgtgataaa
ctgcgaacccaactggagcaggccggttatcgcagcgtcgatcaggtgatggaacacggg
gaattcgccacccgcggcgcgctgctggatctgttcccgatggggagcgacgaaccctac
cgcatcgatttttttgatgatgaaatcgacagcctgcggctttttgatgtggacacgcag
cggacgctaaacgaagtgccgctcgtcaatctgctgcccgcgcatgaattcccaacggat
aaaaacgcgatcgaactgttccgcagtcagtggcgcgaacagtttgaagttcgccgggac
gccgaacatatctatcagcaggtgagtaaaagcgcctggcctgcgggaattgaatactgg
caaccactgttttttaatcaaccgctgccgccgctgttcagctactttcccgaccatacg
ctggtggtgaataccggcgatatcgaacagggcgcggagcgtttctggctggatattcag
caacgcttcgagagccgccgggtcgacccgatgcgcccgctgttgccgccggagtcgtta
tggctgcgcgtcgacaacctgttctccgaattgaaaaaatggccgcgcattcaactgcgc
accgacacgctgccgaaaaaagccgctaacgaaaatctgggttaccagccgctgcccgac
ctggccatccagcatcagcaaaaagcgccgttggaccctctgcgccgctttgtcgaacag
tttgacggccaggtcattttctccgtcgaaagcgaaggccggcgcgaaacgctgcaagag
ctgctggcccgcataaaattgaagcctacgccgattaatagcctggagcaggcgcaaaaa
cgcggcgcctatctgatgatcggcgccagcgagcacggttttatcgatacgattagccag
cgggctctgatttgcgaaagcgacctattgggcgagcgcgtcaatcggcggcggcaggat
aaccggcgcgcgattaacgccgatacgctgattcgcaacctggcggaacttcgtccgggt
caaccggtggtgcatttggaacacggcgtcggccgctatgccggcttaaccaccctggaa
gcgggcggcattaaagccgaatacctgattctgacctacgccggggaagataaactttac
gtgccggtttcatctctgcatctcatcagccgttacgccggcggcgccgacgaaagcgcg
ccgttgcacaaactgggcggcgacgcctggtcgcgcgcccggcaaaaagccgctgagaaa
gtacgcgatgtggcggcggagctactggacgtttacgcccagcgcgccgcgaaaagcggt
ttcgccttcaagcatgataaagaacagtatcagcatttctgcgaaagttttccgtttgaa
accacgcccgatcaggctcaggcgattaacgccgtactgagcgatatgtgtcagccgctg
gcgatggatcgcctggtgtgcggcgacgtcggcttcgggaaaaccgaagtcgccatgcgc
gccgcgttcctcgcggtggaaaatcataaacaggtggcggtattggtccccactaccctg
ctggcccaacagcactacgacaatttccgcgatcgttttgccaactggccgataaaaatt
gaaatgatctcccggttccgcagcgcgcgcgaacaaacgcagattttggatgaaacgcgg
gaaggcaaagtcgatattcttatcggcacgcataagctgttgcagaatgacgtgcactgg
cgcgatctggggctgctgattgtagacgaagagcaccgcttcggcgtgcgtcataaagaa
cggattaaagcaatgcgcgccaacgtggatatcctcacgctgaccgccacgccgatcccg
cgcaccttaaacatggcgatgagcggcatgcgcgatctgtcgattatcgccactccgccc
gcccgccgtctggcggtgaaaacttttgtgcgggagtatgacgagttggtggtgcgcgaa
gccattctgcgcgaaattctgcgcggcggtcaggtttactatctctacaatgacgtggaa
aacattgagaaagccacccggcggctgtccgaactggtgccggaggcgcggattaccatc
ggccacggccagatgcgcgagcgcgagttggagcgggtgatgaatgacttccatcaccag
cgtttcaacgtgctggtctgcaccaccatcattgaaaccggaatcgatattcccagcgcc
aataccatcattattgaacgggccgatcacttcggcctggcgcagttgcaccagttgcgc
ggccgcgtcggacgttcgcatcatcaggcctatgcctatctgcttacgccgaaccccaaa
gcgatgagcggcgacgcgcataaacggctggaagccatcgcctcgctggaggatttaggc
gccggctttgcgcttgccacccatgacctggaaattcgcggcgcaggcgaactactggga
gaagatcaaagcggacaaatggccaccgtcggcttctcgctgtatatggagttgctggaa
agcgccgtcgacgcgctgaaagccgggcgcgaaccgtcgctggaagacctgatcagcagc
cagacggaggttgaactgcggctaccggcgttattgcccgatgactatatccccgacgtg
aatacccggctgtctttctataaacgcatcgccagcgcgaagcaaccaaacgagttggag
gagcttaaagtcgagcttatcgatcgtttcggcctgctgccggatgccgcgcggcatttg
ttgcaggtggcggcgctgcgtcagcaggcgcaagcgctggggatcaaacggatagaaggc
catgaaaaaggcggttttatcgaattcagcgaacagaaccgcgttgatccgacgcatctg
atcgggctgcttcagcaaaatcccggcacttatcgcctggatgggccgacgcggctgaaa
ttcatcaccgatttaagcgcccggccgcaacgcatcgaatttatccaatcgttgttaacc
aatatggcccggcatacgctggcggcgtaa
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integrated database retrieval system
