Brenneria izadpanahii: HC231_17840
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Entry
HC231_17840 CDS
T07407
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
biz
Brenneria izadpanahii
Pathway
biz03030
DNA replication
biz03430
Mismatch repair
biz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HC231_17840 (dnaE)
03430 Mismatch repair
HC231_17840 (dnaE)
03440 Homologous recombination
HC231_17840 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
biz03032
]
HC231_17840 (dnaE)
03400 DNA repair and recombination proteins [BR:
biz03400
]
HC231_17840 (dnaE)
Enzymes [BR:
biz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HC231_17840 (dnaE)
DNA replication proteins [BR:
biz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HC231_17840 (dnaE)
DNA repair and recombination proteins [BR:
biz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HC231_17840 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QTF09570
LinkDB
All DBs
Position
complement(4001466..4004948)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGD
GIKPIVGADFYVASEELGDELAQLTILALDNEGYQNLTLLISHAYQRGYGAEGPTIDRDW
LIEYSKGLLLLSGGRHGDIGKFLLRGNQAQVEQCLAFYQQHFPYRYYLELIRTGRQDEEN
YLHAAVELAIKHELPVVATNDVRFISEDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALTNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTDDYLVKRAREGL
EERLAFLFPDPEERAAKRPAYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNRGGYFKELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPITQYIKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRESLEPHRSGTIPVHLYYQREDARARLRFGAAWRITPTD
VLLNDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgagccacgttttgttcacctgcgtgttcatagtgactattccatgatcgatggg
ctggcaaaagtcgggccgctggtaaaaaaagcggcggcgctaggcatgccggcgctggcg
attaccgatttcactaacctgtgcgggctggtaaagttttacggcggcgctcacggcgac
ggtatcaagccaattgtcggcgcggatttttatgtcgcgagcgaagagttgggcgatgaa
cttgcgcagctcacgatactggcgctggataatgagggctaccagaatctcacgttactg
atatcccatgcctatcaacgcggttacggagccgaaggcccgaccatcgatcgcgattgg
ctgattgaatacagcaaaggattactgctgctgtccggcggccgtcacggcgacatcggc
aaattcctgctgcgcggaaatcaggcgcaggttgagcaatgcctggccttctatcagcag
catttcccttatcgttattatctggagcttatccgcaccgggcgtcaggatgaagagaac
tatctgcatgccgcggttgaactggccattaagcacgaactgccggttgtcgcgaccaat
gacgtccgttttatcagcgaagatgatttcgacgcgcatgaaatccgcgtggcgatccat
gatggctacacgctggacgatcccaaacggccgcgaaattacagtccgcaacagtatatg
cgctccgaagatgagatgtgcgagctgtttgccgatattcccgaagcgctgactaatagc
gtcgaaatagccaaacgctgtaacgtaaccatccggttgggcgaatatttcctgccgcag
ttcccgaccggggatatgtccaccgatgattatctggtcaagcgggccagggaagggctg
gaggagcgcctggcgttcctgttccccgatccggaagagcgggcggctaaacgccccgcc
tatgatgaacgtctggaaacggaacttcaggttatcaaccagatggggttccccggctac
tttctcatcgtgatggagtttatccagtggtccaaggataacgatgttccggtcgggcca
ggacgcggatcgggggcggggtcgctggtggcctactcgttgaaaatcaccgatttggat
ccgctggagttcgacctgctgttcgaacgtttcctgaaccccgaacgtgtttccatgccc
gactttgacgttgacttctgcatggaaaaacgcgacagggtgatcgaccacgttgccgat
atgtacggacgggatgcggtatcgcagattattactttcggtactatggcggccaaagcg
gttatccgcgacgtgggacgggtgctgggtcatccttacggttttgtcgatcgcatttcc
aaactggtgccgcccgatccgggaatgacgctggaaaaagcgttcgcggccgaaccacag
ctacctgaaatctatgaagccgatgaggaagtcagggcgctaatcgacatggcgcgtaag
ctggaaggcgttacgcgcaatgcggggaaacatgccggcggggtggttatctccccgacc
aaaatcacggattttgccccgctgtattgcgatgcggagggcaaccatccggttacccag
ttcgataaaagcgacgttgaatatgccggtctggtgaaattcgacttcctcggcctgcgt
acgctgaccatcatcgactgggcgttggagatgatcaacgcgcggcgggccaagcaaggc
cttgagccgatcgacattgccgcgatcccgctggatgataaaaagagctttgacatgctg
caacgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaggatttgatc
aaacgcctgaagcccgactgctttgaagatatgatagcgttggtggccctgttccgtccc
ggcccgttgcagtccggcatggtggataactttatcgaccgtaagcacggccgcgaagcg
atttcataccccgatatcgaatggcagcatgagtcgctgaaaccggtgctggaaccgacc
tatggtattattctgtatcaggaacaggtgatgcagatcgcccaggttctggcggggtat
acgctgggcggcgcggatatgctgcgccgcgccatgggtaagaaaaagccggaagagatg
gcgaaacagcgctcggtatttaaagagggcgcggaaaggatgggcatcgacggcgaactg
tcgatgaaaatctttgacctggtggaaaaattcgccggctatggctttaacaaatcccac
tcggcggcctatgcgctggtctcctatcagaccctgtggctgaaagcgcattatccggcg
gaattcatggcggcggtgatgaccgccgatatggataacaccgataaagtggtggggctg
gtggacgaatgctggcgcatggggttgaaaattctgccgccggatattaacagcggactt
taccattttcacgtcaacgacgacggcgagatcgtttacggcatcggggcgattaaaggc
gtgggcgaagggccgattgaagcgatcatcgaagcgcgcaatcggggcggctattttaaa
gaactgttcgatctctgcgcccgtaccgatattaagaaactgaatcgccgggtgctggaa
aaactgatcatgtccggggcgttcgatcgcctggggccgcaccgcgccgcgttgatgaat
tcgctgggggatgcgctgaaagcggccgatcaacatgccaaggccgaagccatcggtcag
gtggatatgtttggcgtgctggcggatgcgcccgagcaggttgagcagtcctacagcacg
gtaccgccctggccggaacaggtggtgctggacggtgagcgggaaacgctggggctttac
cttaccggccacccgatcacccaatacattaaggaaatagaacgttatgccggcggcgta
cgtttaaaagatatgcatccgacggaacggggcaaaatgaccacggccgtcggcctggtg
ttggcggccagggtaatggttaccaaacggggaaaccgtattggcgtttgtacgctggac
gatcgttccggtcgccttgagataatgctgtttaccgatgcgttggaaaaatatcagcat
ttattggaaaaagaccgtattctgatcgccagtggacaggtcagctttgatgactttagc
ggcgggcttaaaatgaccgtccgcgagttaatggatatcagcgaagcgcgggaaaaatat
gcgcgcgggcttgctatctctctgactgacaggcaaattgatgaccagttattaaaccgt
ctccgcgaatcgttggaaccgcaccgatcggggacgatcccagtgcatctctattatcaa
cgtgaagatgcgcgcgcccggttacgcttcggtgcggcatggcggataacgccgaccgat
gtgttgctgaacgatctgcgcacattagtgggtaatgaacaggtggaactggaatttgac
taa
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