Brenneria izadpanahii: HC231_20195
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Entry
HC231_20195 CDS
T07407
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
biz
Brenneria izadpanahii
Pathway
biz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC231_20195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biz03019
]
HC231_20195
03009 Ribosome biogenesis [BR:
biz03009
]
HC231_20195
Enzymes [BR:
biz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HC231_20195
Messenger RNA biogenesis [BR:
biz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HC231_20195
Ribosome biogenesis [BR:
biz03009
]
Prokaryotic type
rRNA helicases
HC231_20195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
QTF09981
UniProt:
A0ABX7UW22
LinkDB
All DBs
Position
complement(4528334..4530190)
Genome browser
AA seq
618 aa
AA seq
DB search
MTTELETSFADLGLSAPIINALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAA
FALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQL
RALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVHGLRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLPKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFDRRPRREFRDRDDSRGDRRRDGDRPPRRERRDVGDM
ELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDLLSHFT
RTRILNKPMNMQLLGDAQPHDRNGERRGGRPGGDRRDGAPRRSYSNGERREGNGGERRGR
TFNRDAAPRAPRRRPADA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcgtttgctgatttggggctgagtgctccaattattaat
gccctgaccgatctgggctacgaaaaaccatcgccgatccaggcggaatgtattcctcat
ttactgagtggtcgtgatgtgctggggatggcacagaccggtagtggtaaaaccgcggca
tttgcgctgccattgctgaataatctcaaacccgaattaaaagcgccgcagatgctggtg
ctggccccaacccgcgaattggccgtacaggttgccgaagcctgtaatgattttgctaaa
catatgcatggcgtgaacgtggttgccttatatggcggtcaacgttacgacgtacaactg
cgcgctttacgcggcggcgctcagatcgttgtcggtacgccgggacgtctgctggatcac
ctgaagcgcggtacgctggatctgtccaacctgagcggtctggtgctggatgaagccgat
gaaatgttgcgtatgggctttatcgaagatgttgaaaacatcatggctcagatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgattcgccgcattacgcgc
cgtttcatgaaggatccgcaggaagtgcgtattcagtccagcattactacccgtcctgat
atcagccagagctactggactgttcatggtctgcgtaagaatgaagcgctggtgcgtttc
ctggaagcggaagattttgatgcggcgattattttcgtgcgtaccaaaaacgcgacgttg
gaagtggctgaggctttagagcgcagcggttataacagcgccgcgttaaacggcgacatg
aaccaggctctgcgtgaacagacgctggaacgcctgaaagacggccgcctggatattctg
atcgcaaccgacgtcgccgcccgtggtttggacgtcgatcgcatcagcttggtggtcaac
tacgatatcccgatggatgccgagtcttacgttcaccgtatcggccgtaccggccgcgcc
ggccgcgccggtcgcgcattgctgtttgtcgaaaaccgcgagcgccgtttgctgcgtaac
gttgaacgcaccatgaagctgactatccctgaagttgagctgccgaacgctgaactgctg
gggcaacgtcgtctggcgaagttcgccgctaaggtgcaacagcagctggaaagcagcgat
ctggatatgtatcgcgcgctgttgcctaaattacagcccgaggaagagctggatatggaa
accctggccgccgcactgctgaaaatggcgcagggtgaacgtccgctgattctgccgccg
gatccggtattcgatcgtcgtccgcgccgcgaattccgcgatcgtgacgattcccgcggc
gaccgtcgtcgtgacggcgatcgtccgccgcgtcgtgaacgccgtgatgtgggtgatatg
gagctgtatcgtattgaagtgggtcgtgacgacggcgtggaagttcgtcatattgtgggg
gcgatcgccaacgaaggcgatatcagcagccgctatatcggcaacatcaagctgtttgct
tctcactcaacgattgaactgccgaaaggaatgccgggcgatctattgtcgcactttacc
cgcacccgcattctgaataagccgatgaacatgcagttactgggcgatgctcagccgcat
gaccgaaacggcgaacgccgtggcggccgtcccggcggcgatcgtcgtgacggtgcgccg
cgtcgttcctacagtaacggcgaacgccgtgaagggaatggcggcgagcgccgtggacgt
actttcaatcgtgatgccgcgccgcgcgcgccgcgtcgccgtccggccgatgcgtaa
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