Brenneria izadpanahii: HC231_20415
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Entry
HC231_20415 CDS
T07407
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
biz
Brenneria izadpanahii
Pathway
biz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HC231_20415 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
biz03021
]
HC231_20415 (rpoD)
Transcription machinery [BR:
biz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HC231_20415 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3246
Sas-6-like_oligomerization
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
QTF10020
UniProt:
A0ABX7UXA0
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Position
4577833..4579671
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELAGEDLDDDDDEEDDEDDADDDNSIDPELARQKFTELREQYETTRQIIKTYGRS
HAKSAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIMKLCVEQCKMPKKN
FVTLFSGNETSDSWFTAAIAMAKPWSEKLNVVEEDVKRSLQKLHQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctaaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgccgaggtcaatgaccatctgccggaagatatcatcgactccgaccag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcgccg
gatgcagatgatctattactggcagaaaataccaacgacgcggatgaagacgcggcagag
gctgctgctcaggtgttatccagcgttgaatcggaaatcggccgtacgaccgatccggtt
cgtatgtacatgcgtgaaatgggtaccgttgaattgctgacgcgcgaaggcgagatcgat
atcgccaagcgtatcgaagacggtatcaatcaggttcagtgttccgttgccgaatacccg
gaagcgattacctatctgctggaacagtacgatcgcgtcgaagcgggcgaaagccgctta
tccgatctgattaccggattcgtcgatcccaacgcggaagaagatatcgcgccgaccgcc
acccatgtcggctccgagcttgccggcgaagatctcgatgacgatgatgacgaagaagat
gacgaagacgacgctgatgatgacaacagcatcgatcctgaactggctcgtcagaaattt
actgaactgcgtgaacaatacgaaacgacgcgtcagatcatcaagacctacggccgcagt
cacgctaagtcggctcaggaaattctgaatctgtccgaagtcttcaaacagttccgctta
gtgccgaaacagttcgatttcctggttaacagcatgcgttcaatgatggaccgcgtgcgt
actcaggaacgtctgatcatgaagctgtgcgttgaacagtgcaaaatgccgaagaaaaac
ttcgtcaccctgttctccggcaatgaaaccagcgactcctggtttactgcggcgatagcc
atggccaagccgtggtctgaaaagctgaacgtcgtggaagaagacgttaagcgcagcctg
cagaaattgcatcagattgaagaagaaaccggtctgacgatcgaacaggtcaaagacatc
aaccgtcgtatgtcgatcggcgaagcgaaagcccgccgcgcgaaaaaagagatggttgaa
gcgaacctgcgtctggttatttctatcgccaagaaatacaccaaccgcggcttgcagttc
cttgacctgattcaggaagggaacatcggtctgatgaaagcggtggacaagtttgaatat
cgccgcggttataagttctcgacctatgcaacctggtggatccgtcaggcaattacccgt
tccatcgccgaccaggcgcgcaccatccgtattccggtgcatatgattgaaaccatcaac
aaactcaatcgtatttcccgccagatgttgcaggaaatgggccgcgagccgacgccggaa
gaactggccgaacggatgctaatgccggaagataaaatccgcaaagtgctgaagatcgcc
aaagagccgatttcgatggaaacgccgattggcgatgatgaagattcgcatctgggcgac
tttatcgaagacaccacgctggaactgccgctggattccgcaacgtcggaaagcctgcgt
tcggcgacgcacgacgtgttggccggcctgaccgcgcgtgaagcgaaagtgctgcgtatg
cgttttggtattgatatgaataccgaccatacgctggaagaagtcggtaaacagtttgat
gttacccgcgaacgtattcgccagatcgaagcgaaagcgttgcgtaagctgcgtcatcca
agccgctcggaagtgctgcgcagtttcctggacgattaa
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