Brenneria izadpanahii: HC231_22385
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Entry
HC231_22385 CDS
T07407
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
biz
Brenneria izadpanahii
Pathway
biz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
biz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HC231_22385 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
biz03021
]
HC231_22385 (rpoB)
03400 DNA repair and recombination proteins [BR:
biz03400
]
HC231_22385 (rpoB)
Enzymes [BR:
biz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HC231_22385 (rpoB)
Transcription machinery [BR:
biz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HC231_22385 (rpoB)
DNA repair and recombination proteins [BR:
biz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HC231_22385 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
QTF10362
UniProt:
A0ABX7V0J2
LinkDB
All DBs
Position
complement(4998206..5002234)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKVVYEINGNKLQMD
LTPERLRGETASFDIEAEGKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIVGKVLSKD
YVDESTGELIGTANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPSNDRL
SSLVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDNVVT
DEIHYLSAIEEGNFVIAQANTNLDEDGHFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGVEADKLDKLPRERWLELALTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQQEEVAK
LREFIQKAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggcaaacgaccgcaa
gtgctggacgtgccttatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggtcagtacggtttggaagctgcattccgttctgttttccccatacag
agttatagcggtaattcagagctgcaatacgttagctatcgcctgggtgaaccggtattt
gacgttaaagaatgtcaaatccgtggcgtgacattttctgcgccgctgcgcgtcaaattg
cgcctggtgatttacgaacgtgaagcgcctgaaggcaccgttaaagatatcaaagagcaa
gaagtttacatgggcgaaattccgctcatgaccgacaacggcacttttgtgatcaacggt
actgagcgtgttatcgtttctcagttgcaccgtagtcctggtgtattcttcgacagcgac
aagggtaaaacccactcttcaggtaaggtgctgtataacgcacgcatcattccttatcgt
ggttcctggctggatttcgaattcgatccgaaagataacctgtttgtccgtattgaccgc
cgccgtaaactgcccgcgacgattattctgcgcgcgctgggctactctaccgaacagatc
ctggacttgttcttcgataaagttgtctatgaaatcaatggcaacaaattgcagatggat
ctgacgcctgagcgtctgcgcggtgaaaccgcttctttcgatattgaagcggaaggtaaa
gtttacgttgagaaagggcgtcgcatcaccgcccgccatatccgtcagttagagaaagac
ggcatcgagcgtattgaagtaccggtcgaatatatcgtcggtaaagtgctttccaaagat
tacgtggatgaaagcaccggcgaactgatcggcaccgctaatatggaattgtcgctggat
ctgttggcgaagctgagccaatccggccacaaacgtattgaaacgctgttcaccaacgat
ctggatcacggcccgtatatctcggaaactctgcgagtggatccgtctaacgaccgtttg
agctcgctggttgaaatttaccgcatgatgcgtcccggcgagccgccgacgcgtgaagcg
gctgaaacgctgtttgagaatctgttcttctccgaagatcgctacgacttatctgcggtc
ggccggatgaagttcaaccgttctctgctgcgcgacgaaattgaaggttccggtatcctg
agcaaagaagacatcatcgatgtgatgaaaaagctcattgatattcgtaacggtaaaggc
gaagtcgatgatatcgaccacctgggcaaccgtcgtatccgctccgtcggcgaaatggct
gaaaaccaattccgcgttggtttggttcgtgttgaacgcgcggtgaaagagcgtctttcc
ctgggcgatctcgacacgctgatgccgcaggacatgatcaacgccaagccgatttcggcc
gcggtgaaagagttcttcggttcaagccagctgtcgcagtttatggatcagaacaacccg
ctgtccgagattacgcacaaacgccgtatctctgccttgggcccaggcggtttgactcgt
gaacgcgccggctttgaagttcgagacgtacacccgacccactatggccgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtctgtttatgcgcag
actaacgagtatggtttcctggaaacgccttaccgtcgcgtgcgcgacaatgtggtaacg
gatgaaatccattacctgtccgcgattgaagaaggcaacttcgttatcgcccaggcgaac
accaacctggatgaagacggccacttcattgatgaactggttacctgccgtaataaaggc
gagtccagcttgttcagccgcgatcaggttgaatatatggacgtatccactcagcaggtg
gtatccgtcggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccaaccctgcgcgccgataagccgctggtt
ggtaccggtatggaacgtgcggttgcggtcgactccggcgtaacggctgtcgcgaaacgc
ggcggtaccgtgcagtatgtcgatgcgtcacgtatcgtgatccgcgttaacgatgatgaa
atgtatccgggcgaagccgggatcgatatctataacctgaccaaatatacccgctccaac
cagaacacctgcatcagccagatgccttgcgtatctctgggcgagccggttgaacgcggc
gacgtactggccgatggcccgtccaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtctctgag
cgtgtggtgcaggaagatcgctttaccagcatccatattcaggaactggcctgcgtgtct
cgcgacaccaagctggggccggaagaaatcacggccgatatcccgaacgtgggcgaagcg
gcgctctccaaactggatgagtccggtatcgtgtatatcggcgcggaagtgaccggcggc
gacattctggtcggtaaggttacgccaaaaggcgaaacccagctgaccccggaagagaaa
ctgctgagagcgatcttcggtgagaaggcgtccgacgttaaggattcttctctgcgcgtg
ccgaacggcgtttccggtacggttatcgacgtacaggtctttacccgcgacggcgtggaa
aaagataaacgtgcgttggaaatcgaagagatgcagctcaagcaggctaagaaagacctg
accgaagagctgcagattctggaagccggtctgtttgcccgtatccatgcggtgctggtt
tccggcggcgtggaagcggataaactggacaaactgccgcgcgagcgctggctggaactg
gctctgactgatgaagagaaacaaaatcagctggaacagttggccgagcagtacgacgag
ttgaagcacgagtttgagaaaaaacttgaagctaaacgccgtaagatcactcagggcgac
gacctggcgccgggcgtgctgaaaatcgtcaaggtttatctggccgttaaacgtcggatt
caaccgggtgacaagatggcgggtcgtcacgggaacaagggcgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccttcgcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtattggtgagaagatcaacgccatgctgaagcagcaggaagaagtggccaag
ctgcgtgagttcattcagaaagcctacgatttgggcgacgacgtgcgccagaaagtcgat
ctgagcactttctccgacgaagaagtgatgcgtctggctgagaacctgaaaaaaggtatg
ccgatcgcaacgccggtattcgacggtgcgaaggagaaagaaatcaaggaactgctgcag
atgggcggtatcccgacttccggtcagatcacactgtacgatggacgtaccggcgagcaa
tttgaacgtcaggttaccgtgggatacatgtatatgctgaagttgaaccacctggtcgac
gacaagatgcatgcgcgttctacgggttcttacagcctggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggtgcagcctataccctgcaggaaatgctgacggttaaatccgatgacgtgaacggc
cgtactaagatgtataagaacatcgtagacggcaatcatcagatggagccgggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaagagtaa
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