Bradyrhizobium diazoefficiens USDA 110: bll4135
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Entry
bll4135 CDS
T00109
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bja03016
]
bll4135 (rnd)
Enzymes [BR:
bja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
bll4135 (rnd)
Transfer RNA biogenesis [BR:
bja03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
bll4135 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAC49400
UniProt:
Q89MQ7
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All DBs
Position
complement(4571210..4572358)
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AA seq
382 aa
AA seq
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MDLITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVGI
DLKPFFELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYGDSIAYDQL
VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI
EMEVLTSPRTYDFHPERAWERLKTRVRKPKDLAVLMEVAAWREQEAQSRDVPRGRVLRDE
AVSDIATHAPNTLEKLAHLRSVPKGFEKSKWGADIVAAVERGLARDFSTLPKLEKPRNNS
NGAAIVELLKVLLRMTAERHAVASKVIATVDDLEEIAASDEADVPALRGWRRELFGDAAL
KLKRGELALAIEKGRVIGVERA
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggatttgattaccaccaccgctgaccttgcggctgcctgcagccgactggccaagcac
cccgtcattactgtcgataccgagttcctgcgcgagaccacctattacccgctgctgtgc
gtggtgcagatggccagccccgaggaagcgatcgtcatcgacaccctggccgtgggcatc
gacctcaagccgttcttcgagctgatgggcaacgaggccgtgctgaaggtgttccacgcc
gcccggcaggacatcgagatcatctggcaccaggccaacatcatcccgcatccggtgttc
gacacccaggtcgcggccatggtgctcggctatggcgacagcatcgcctacgaccagctg
gtcgagaaggtcaccggccaccgcccggacaagacccaccgcttcaccgactggtcgcgc
cgcccgctgaccaaggagcagatgcactacgcggtgtccgacgtcacccatctgcgcgac
gtattcgcggcgctcgatgccgacctgaagaagcgccgccgcagcgaatgggtctccatc
gagatggaggtcctgacctcgccccgcacctacgacttccaccccgagcgcgcctgggag
cggctgaagacgcgggtgcgcaagccgaaggacctcgcggtgctgatggaggtcgcggcc
tggcgcgagcaggaggcgcaaagccgcgacgtgccgcgcggccgcgtgctgcgcgacgag
gccgtcagcgacatcgccacccatgcgcccaacacgctggaaaagctcgcccatctgcgc
tcggtgccgaaggggttcgagaaatccaaatggggcgcggacatcgtcgccgcggtcgag
cgcggcctggcgcgggatttctcgacgctgccgaagctggagaagccgcgcaacaattcc
aacggcgcggccatcgtcgagcttttgaaggtcctgctgcggatgactgcggagcgccat
gcggtcgcaagcaaggtgatcgcgactgtcgacgatctcgaggagatcgcagccagtgac
gaggccgacgtccccgccctgcgcggctggcgccgcgagctgttcggcgatgccgcgctg
aagctgaaacgcggcgagctggcgctggcgatcgagaagggtcgcgtgatcggggtcgag
cgggcgtaa
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