Bradyrhizobium diazoefficiens USDA 110: bll4305
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Entry
bll4305 CDS
T00109
Symbol
bll4305
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
bll4305 (bll4305)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bja03019
]
bll4305 (bll4305)
03009 Ribosome biogenesis [BR:
bja03009
]
bll4305 (bll4305)
Enzymes [BR:
bja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
bll4305 (bll4305)
Messenger RNA biogenesis [BR:
bja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
bll4305 (bll4305)
Ribosome biogenesis [BR:
bja03009
]
Prokaryotic type
rRNA processing factors
bll4305 (bll4305)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
BAC49570
UniProt:
Q89M88
LinkDB
All DBs
Position
complement(4747660..4750758)
Genome browser
AA seq
1032 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNAR
RRGHGERVRSDIVEGLDASADPAAQPVEGQILPEHAEGAPQEGEHLHADAEHHGEHDAHD
HHEHDHHDHDHHEHAHDDHHPDHAHDHDDHGHDGGHDHHDHDHADETPAPVAAFGAEPVV
ATEAVAEPQEATSEAHAEALAEAVTAAAEPADAVYAAGESTEAPHHDADAAAEDDDDEDD
DGEEAEEEVVESVGGDDVMEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAA
LTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAA
RTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGE
SGYREARDFMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQ
TEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRN
NRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRS
VSSVALQLLRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLAVIAD
PSVSGPQAYLIDRGEQVHTLEAAKALLAAQAAASPPPVVEEAYDDEEFDPELESEIESEE
TEGLTEEQAAGEAAPEQDGQRRKRRRRRRGRGGQRDGELREDSAPTLPEPAMVAGESEED
AESEQDGEEGEEQAARGEQQGGGERRRRRGRRGGRRRRGGGEEGLAGSIGDELGTQSPSE
ATEAVADFDGFGGEAAPSIAQAEHTAEPQIAPPEPRAEVQAEVPAQPEPAPAVVTAEEEP
ADEKAARRRSTVREKVSFLSSSPSEPATPVAQASEPVAPPAPAPAPAPEAASETPAAPRR
AGWWSRRFGGGE
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaggagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaactgcgcggg
aatatctacctcgccaaggtcaccagggtcgaaccctcgctccaggccgcgttcgtcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgaaatccatcccgactactaccag
atcccggttgccgaccggcaggcgctgatcgaggccgaggaacaggcccatcgcgaagcc
gaggaagagagcgagaaccgctcgcacggccgccgccgctcgcgtcaccgcaacgcccgc
cgccgcggtcacggcgaacgcgtccgcagcgacatcgtcgaaggcctcgacgccagcgcc
gatcccgcggcgcagccggtcgagggccagatcctgcctgagcacgccgagggcgctccg
caagagggcgagcatctgcacgccgacgcggagcatcacggcgagcacgatgcccatgac
caccacgaacatgatcaccacgatcatgatcaccatgaacacgcgcacgacgaccatcat
cccgatcacgctcacgatcatgacgaccatggtcatgacggcgggcacgatcatcacgac
cacgatcatgccgacgagacgcccgcgcctgtcgcggcctttggcgccgaaccggtggtc
gcgaccgaggccgttgccgaaccgcaggaggcgacctccgaagcgcacgcagaggctctg
gccgaagccgtaaccgccgccgctgaaccggctgatgccgtgtacgctgccggcgaaagc
accgaagctccgcatcacgacgctgacgcggcggccgaggacgacgacgacgaggatgac
gacggcgaggaagccgaagaggaagtcgtcgaatccgtcggcggcgacgacgtgatggag
gaagtgccggagcgcaccttccgtccgcgccgccagtacaagatccaggaagtcatcaag
cgccgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcg
ctgacgacctatctgtcgctcgccggccgctacgccgtgctgatgccgaacaccgcgcgc
ggcggcggcatcagccgcaagatcaccagcgcccaggaccgctcgcgtctgaaggaagtg
gtgcaggatctcgacgtgcccgagggcatgggcatcatcctgcgcacagccggcgccgcc
cgcaccaagcccgagatcaagcgcgacttcgaatacctgatccggatgtgggagacggtg
cgcgacctgacgctgaagtcgcaggccccgaccctcgtctatgaggaaggctcgctgatc
aagcgctcgctgcgcgacctctacaacaaggagatcgacgagatctcggttgccggcgaa
tccggctaccgcgaagcgcgcgacttcatgaagatgctgatgcccgccaacgtcagcgcg
gtgaagcagtatcgcgacggccagccgctattctcgcgcatgggcgtcgaaagccagttg
gacgcgatgttctcgccgaccgtgcagctgcgctccggcggctacatcgtgatcaaccag
accgaggcgctggtctcgatcgacgtcaactccgggcgatcgacgcgcgagcaccatatc
gaggacaccgcgctcaagaccaatctggaagcggccgaagaggtcgcccgccagctccgc
ctgcgcgacctcgccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaac
aaccgggcggtcgagcgcaagctgtccgattgcctcaggcaggaccgcgcacgcatccag
gtcggacgcatctcgcatttcggcctgctcgagatgtcgcgccagcgcatccgtgccagc
gtgctggaatcctcgaccgatccctgcccgcattgcggcggcaccggccatgtccgctcg
gtgtcctcggttgcgctccagctgctgcgcggcctcgaagagatcctgatgaagggcgcg
acccacaatctcgtggtccgtacccgcaccgacgtcgcgctctacgtgctgaaccacaag
cgcggccatctgcgcgacctcgaaaacggcttcaaggtcaccctggcggtcatcgccgac
ccgagcgtcagcggaccgcaggcctacctcatcgatcgcggcgagcaggtgcatacgctc
gaagccgccaaggcgctgctcgcggcgcaggccgcggcaagcccgcccccggtggttgaa
gaggcctatgacgacgaggagttcgatccggagctggaatccgagatcgagtccgaggag
accgaaggtctcactgaagagcaggctgccggcgaggcggcccccgagcaggacggtcag
cgccgcaagcgccgccgtcgtcggcgcggccgcggtggccagcgcgacggcgagttgcgc
gaggatagcgcgcccacgcttcccgagccggcaatggtcgctggcgagtccgaagaggac
gccgagtccgagcaggacggcgaggaaggcgaggaacaggcagcccgtggcgagcagcag
ggcggcggtgagcgccggcgccggcgtggccgcagaggcggacgccgtcggcgtgggggc
ggcgaggaaggtcttgccggctccatcggcgacgagctcggcacccaatcaccatcggaa
gctaccgaagcggtggccgatttcgacggctttggcggcgaggctgcgccttcgatcgcg
caggccgagcacaccgccgagccgcaaatcgcgccgcctgagccgcgtgccgaagtgcag
gccgaggtgccggctcagccggagccagctcctgctgtcgtaacggcggaagaagagccc
gctgacgagaaggccgcgcggcggcgctccaccgtccgggaaaaggtgagcttcctgtcg
agcagcccaagcgagcccgcaacgcctgttgcgcaggcgagcgagccggtcgcgccgccc
gcgccggcacctgcgcccgcaccggaagcggcaagcgaaacgccggccgccccacgccgc
gccggctggtggtcccgccgtttcggcggcggcgaataa
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