Bradyrhizobium diazoefficiens USDA 110: bll5376
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Entry
bll5376 CDS
T00109
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bll5376 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bja03021
]
bll5376 (rpoA)
03400 DNA repair and recombination proteins [BR:
bja03400
]
bll5376 (rpoA)
Enzymes [BR:
bja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bll5376 (rpoA)
Transcription machinery [BR:
bja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bll5376 (rpoA)
DNA repair and recombination proteins [BR:
bja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bll5376 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
DUF4249
Motif
Other DBs
NCBI-ProteinID:
BAC50641
UniProt:
Q89JA7
LinkDB
All DBs
Position
complement(5922421..5923452)
Genome browser
AA seq
343 aa
AA seq
DB search
MGETVTIQKNWQELIRPNKLQVTPGSDPARFATIVAEPLERGFGQTLGNALRRILLSSLQ
GAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGVVTA
GDIQTVGDVVVLNPDLQICTLDEGAEIRMEFTVATGKGYVPAERNRPEDAPIGLIPVDSL
YSPVRKVSYKVENTREGQILDYDKLTMTIETNGAISPDDSVAYAARILQDQLNVFVNFEE
PRKEVAQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPN
FGRKSLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacagtgacgatccagaaaaattggcaagaactgattcggccgaacaagctc
caggtcacgcccggcagcgatccggcccgttttgcgaccatcgtcgccgagccgctcgag
cgcggcttcggccagaccctcggcaacgcgctgcgccgcatcctgctctcctcgctccag
ggcgcggcggtgcagtcggtgcacatcgacggcgtgctgcacgagttctcctcgatcgct
ggcgtccgtgaggacgtcaccgacatcgtgctcaacatcaaggacatctcgatcaagatg
cagggcgaaggccccaagcgcatggtcgtgaagaagcagggcccgggcgtcgtcaccgcc
ggcgacatccagaccgtcggcgacgtcgtcgtgctcaatccggacctccagatctgcacg
ctcgacgagggcgcggagatccgcatggagttcaccgtcgcgaccggcaagggctacgtg
cccgccgagcgcaaccgtcccgaggatgcgccgatcggcctgatcccggtcgacagcctg
tactcgccggtccgcaaggtctcctacaaggtcgagaacacccgcgagggccagatcctc
gactacgacaagctgaccatgacgatcgagaccaacggcgcgatctcgccggatgactcg
gtggcttacgccgcccgcatcctccaggatcagctcaacgtgttcgtcaacttcgaagag
ccgcgcaaggaagtcgcccaggagatcatcccggacctcgccttcaacccggccttcctc
aagaaggtggacgagctcgagctgtcggtgcgttcggccaactgcttgaagaacgacaac
atcgtctacatcggcgacctcgtgcagaagagcgaggcggaaatgctccgcaccccgaac
ttcggccgcaagtcgctgaacgagatcaaggaagtgctggctcagatgggtctgcatctc
ggcatggaagtgccgggctggccgccggagaacatcgacgagctcgccaagcgcttcgag
gatcactactga
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