Bradyrhizobium diazoefficiens USDA 110: blr5111
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Entry
blr5111 CDS
T00109
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bja03032
]
blr5111 (topA)
03400 DNA repair and recombination proteins [BR:
bja03400
]
blr5111 (topA)
Enzymes [BR:
bja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
blr5111 (topA)
DNA replication proteins [BR:
bja03032
]
Prokaryotic type
DNA Topoisomerases
blr5111 (topA)
DNA repair and recombination proteins [BR:
bja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
blr5111 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Milton
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAC50376
UniProt:
Q89K08
LinkDB
All DBs
Position
5666064..5668550
Genome browser
AA seq
828 aa
AA seq
DB search
MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEVDPKAAG
RLNDIAKSLKNADRLILATDPDREGEAISWHVLEVLKEKRALKDQKIERVVFNAITKQAV
TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ELEIEKFVAREYWSLVATLLTPRGDAFEARLVGADGKKIQRLDIGTGAEAENFKKALEAA
AYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDIGGETTGL
ITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPEAPRQYQAKAKNAQEAHEAIRPTDMSR
RPDSMSRKLDSDQARLYELIWKRTIASQMEAAELERTTVDITAKAGGRTLELRATGQVVK
FDGFLALYQEGRDDEEDEDSRRLPAMSAGDGLKRQSLAVTQHFTEPPPRFSEASLVKRME
ELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLESFFSRYVEYDFTANLE
EQLDRISNNEISWQQVLKDFWNGFIGAVDEIKDLRVAQVLDVLDDMLGQHIYPPRADGGD
IRQCPSCGNGRLNLKAGKFGAFVGCSNYPECRYTRQLAADSEATADRSLGQDPDTGRDVW
VKAGRFGPYIQLGEQKDYEEGEKPKRAGIPKGTSPGDVELELALKLLSLPREIGKHPETG
QPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKVAKGPSRRFGADPGKA
IGDHPTLGTVTVKSGRYGAICHRRRRQRDDPGRVRKGHRHAAAGDRTD
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtcattgtggagtcgccggcgaaagccaagacgatcaacaagtatttgggc
tcgtcctatgaggttctggcctcgttcggccatgtccgcgacctcccggcgaagaacggt
tccgtcgatccggacgccaatttcaagatgatctgggaggtcgaccccaaggcggccggc
cggctcaacgatatcgccaagtctctgaagaacgccgaccgcctgattctcgccaccgac
cctgatcgcgagggcgaggccatctcctggcacgtgctggaggtgttgaaggaaaagcgc
gctctcaaggatcagaagatcgagcgcgtggtgttcaacgccatcaccaagcaggccgtc
accgacgcgatgaagcatccgcgccagatcgacggcgcgctggtcgacgcctatatggcg
cgccgcgcgctggactatctggtcggcttcaccctctcccccgtgctgtggcgcaagctg
ccgggcgcccgctcggccggccgcgtgcagtcggtggcgctgcgcctcgtctgcgaccgc
gagctcgagatcgagaagttcgtcgcccgcgaatactggtcgctggtcgcgaccctgctc
accccgcgcggcgatgcgttcgaggcgcgtctcgtcggcgccgacggcaagaagatccag
cgcctcgacatcggcaccggcgcggaagccgaaaacttcaagaaggcgctggaagccgcc
gcctacgcggtcaccgcggtcgatgcaaaacccgcccgacgcaatccgcaggcccccttc
accacctccacgctgcagcaggaagccagccgcaaatacggctttgcgcccgcgcacacg
atgcgcatcgcccagcgcctctatgaaggcatcgacatcggcggcgagaccaccggactc
attacttatatgcgtaccgacggcgtgcagatcgatccgtccgcgatcacccaggcgcgc
aaggtgatcggcgaggattacggcaacgcctacgtgccggaggccccgcgccagtaccag
gccaaggccaagaacgcccaggaagcgcacgaagcgatccgcccgaccgacatgtcccgc
cgcccggacagcatgagccgcaagctcgattccgatcaggcgcggctctacgagctgatc
tggaagcgcaccatcgcgagccagatggaagcggccgagctcgagcgcaccaccgtcgac
atcacggcgaaggccggcggccgtacgctggagctgcgcgccaccggccaggtcgtcaag
ttcgacggcttcctcgcgctctaccaggaaggccgcgacgacgaggaagacgaggattcc
cgccgcctgcccgcgatgagcgccggcgacggcctgaagcggcagtcgctcgccgtcacc
cagcacttcaccgagccgccgccgcgcttctccgaggcctcgctggtcaagcgcatggag
gagctcggcatcggccggccctcgacctatgcctcgatcctccaggtcctgaaggaccgc
ggctacgtcaagctggagaagaagcgcctgcacggcgaggacaagggccgcgtcgtggtc
gcgttcctcgaaagcttcttcagccgctacgtcgaatacgacttcaccgccaacctggaa
gagcagctcgatcgcatctccaacaacgagatctcctggcagcaggtgctgaaggatttc
tggaacggcttcatcggcgccgtcgacgagatcaaggatttgcgcgtggcgcaggtgctg
gacgtgctcgacgacatgctcggacaacacatctatccgccccgcgccgacggcggcgac
atcaggcagtgcccgagctgcggcaacggccggctcaatctcaaggccggcaagttcggc
gccttcgtcggctgctcgaactatccggagtgccgctacacccgtcagctcgccgccgac
agcgaggcgacggccgaccgttcgctcggccaggatcccgacaccggtcgcgacgtctgg
gtcaaggctggccgcttcggcccgtacatccagctcggcgagcagaaggattatgaggaa
ggcgagaagccgaagcgcgcgggcatcccgaagggcacctcgcccggcgacgtcgagctc
gagcttgcgctgaagctgttgtcgctgccgcgcgagatcggcaagcatccggagaccggt
cagccgatcaccgccggcctcggccgcttcgggccgttcgtgaagcacgagaagacctat
gccagcctcgaggccggcgacgaggtcttcgacatcggcctcaaccgcgccgtgacgctg
atcgcggaaaaggtcgccaagggcccgagccgccgcttcggcgccgaccccggcaaggcg
atcggcgatcatccgacgctcggcaccgtcaccgtgaagagcggccgttacggcgccata
tgtcaccgccggcggcgtcaacgcgacgatcccggccgagttcgaaaaggacaccgtcac
gctgccgcaggcgatcgcactgattga
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