Bradyrhizobium diazoefficiens USDA 110: blr5112
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Entry
blr5112 CDS
T00109
Symbol
rnr
Name
(GenBank) exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
blr5112 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bja03019
]
blr5112 (rnr)
03016 Transfer RNA biogenesis [BR:
bja03016
]
blr5112 (rnr)
Enzymes [BR:
bja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
blr5112 (rnr)
Messenger RNA biogenesis [BR:
bja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
blr5112 (rnr)
Transfer RNA biogenesis [BR:
bja03016
]
Prokaryotic type
tRNA degradation factors
blr5112 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAC50377
UniProt:
Q89K07
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All DBs
Position
5668829..5671171
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AA seq
780 aa
AA seq
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MKRKNDRGFPDRQAIVAFIKANQGNVGTREIAREFGLKNADRVELKRMLRELADDGTIKK
KRHKVSEPDTLPSTLVADITGRDSDGELIASPTEWDEVESGEPPKILIVMPRRPKPGTAA
GVGDRALLRVERIDETEGPAYRGHIIKVFDKAKSRILGVFRSLPEGGGRLVPVDKKSADR
ELNIAAADTQGAQDGDLVSVDIVRSRAFGLASGRVKEKLGSVKSEKAISLIAIYAHDIPL
QFRPAAEREAEAAEPANLKGREDWRDVPLVTIDPPDAKDHDDAVHAQADDDPNNKGGFIV
NVAIADVSFYVRPGTALDRDALDRGNSVYFPDRVVPMLPERISNNLCSLVPGEPRGALAV
RMVIGPDGRKRSHTFHRILMRSAAKLNYAQAQAAIDGRPDDTTGPLLDPILRPLYTAYAC
VKRARDERDPLNLDLPERKILLKSDGTVDRVIVPERLDAHKLIEEFMILANVAAAEMLEK
KSLPLIYRVHDEPTLEKVHALAEFLETLDVPFAKSGALRPALFNRVLAQLEGHDHFPLVS
EVVLRAQAQAEYSAENYGHFGLNLRRYAHFTSPIRRYADLVVHRALVRALGLGEGALPDT
ETPETLGEVAAHISVTERRAMKAERETVDRLIAHHLADRIGSSFQGRVSGVTRAGLFVKL
SETGADGLIPIRSLGTEYFNYDESRHALVGTRSGAMHQLGDVVDVRLIEAAPIAGALRFE
LLSSSGETAPQGRRASGRQRRPSFKAHPGRSPAKKHKPAKPKKPGKGKKNKGKGQKGKAW
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcaagaatgaccgtggctttcccgacaggcaagccatcgtcgccttcatcaag
gcaaatcagggaaacgtcggcacccgcgaaattgcgcgcgagttcggcctgaagaacgcc
gatcgcgtcgagctcaagcgcatgctgcgcgagctcgccgacgacgggaccatcaagaag
aagcgccacaaggtctcggaaccggacaccctgccgtcgacgctggtcgccgacatcacc
ggccgcgactccgatggcgagctgatcgcctcccccaccgaatgggacgaggtcgaaagc
ggcgaaccgccaaaaatcctcatcgtcatgccgcgccggccgaagcccggcaccgccgcc
ggcgtcggcgaccgcgccctgctgcgcgtcgagcgcatcgacgagaccgaaggcccggcc
tatcgcggccacatcatcaaggtcttcgacaaggccaagagccgcatcctcggcgtgttc
cgcagtctgcccgaaggcggcggacggctcgttcccgtcgacaagaaatctgccgaccgc
gagctgaacattgccgcggccgacacgcagggcgcccaggacggcgacctcgtcagcgtc
gacatcgtccgctcacgcgcctttggcctcgcctcaggccgcgtgaaggagaagctcggc
tcggtcaagtcggagaaggcgatcagcctgatcgcgatctacgcgcacgacattcccctg
caattccgccccgcggcagagcgtgaagccgaagcggcggagccggcgaacctgaagggg
cgcgaggactggcgcgacgtcccgctcgtcaccatcgatccgcccgatgcgaaagatcat
gacgacgcggtccatgcgcaggccgacgacgatcccaacaacaagggcggcttcatcgtc
aacgtcgccattgccgacgtgagcttctacgtgcggccgggcaccgcgctcgaccgcgat
gcgctcgaccgcggcaactcggtctatttccccgaccgcgtcgtgccgatgctgccggag
cgcatctccaacaatctctgctcgctggtgccgggcgagccgcgcggcgcgctggcggtg
cgcatggtgatcggcccggacggccgcaagcgctcgcatacgttccaccgcatcctgatg
cgctcggcggcgaagctgaactacgcacaggcgcaggccgcgatcgacggccggcctgac
gacaccaccggccccctgctcgatccgatcctgaggccgctctacaccgcctatgcctgc
gtcaagcgcgcaagagacgagcgcgatccgctcaatctcgatctgcccgagcgcaagatc
ctcttgaagagcgatggcacggtcgatcgcgtcatcgttcccgagcgtctcgatgcgcac
aagctgatcgaggagttcatgatcctcgccaacgtcgctgccgcggaaatgctcgagaag
aagtcgctgccgctgatctaccgcgtgcacgacgagccgacgctggagaaggtccacgcg
ctcgcggagtttctggagacgctcgacgttcccttcgccaaatcaggcgcgctgcgcccg
gccctgttcaaccgcgtgctggcccagctcgagggccacgaccacttcccgctggtgagc
gaagtcgtgctccgcgcccaggcgcaggccgaatattccgctgagaattacggtcatttc
ggcctgaacctgcgccgctacgcgcatttcacctcgccgatccgccgctatgccgacctc
gtcgtgcaccgcgcgctggtccgcgcgctcggccttggcgaaggtgcgctgcccgacacc
gagacaccggaaacgctcggcgaggtcgcagcccacatctcggtgaccgagcggcgcgcg
atgaaggcggagcgcgagaccgtggaccggctgatcgcgcaccatctcgccgaccgcatc
ggctccagcttccagggccgcgtttccggcgtcacgcgcgccggcctgttcgtcaagctg
agcgagaccggcgccgacggcctgatcccgatccgatcccttggcacggaatatttcaac
tatgacgagagccgccatgccctcgtcggcacgcgcagcggcgccatgcatcagctgggt
gacgtggtcgacgtccgtctgatagaagcagctccgatcgcgggcgcgctgcgcttcgag
ctgctgtcgtcaagcggcgagaccgcgccgcagggccgcagggcatccggtcggcaacgc
cgcccctcgttcaaggcgcatcccggacgcagtccggcgaagaagcacaagccggcgaag
ccgaagaagcccggcaagggcaagaagaacaagggcaaaggccagaagggcaaggcatgg
tga
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