Borreliella japonica: QIA21_03735
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Entry
QIA21_03735 CDS
T09309
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bjo
Borreliella japonica
Pathway
bjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QIA21_03735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjo03400
]
QIA21_03735 (mfd)
Enzymes [BR:
bjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QIA21_03735 (mfd)
DNA repair and recombination proteins [BR:
bjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QIA21_03735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
UB2H
Cas3-like_C_2
NdhM
Motif
Other DBs
NCBI-ProteinID:
WKC88272
LinkDB
All DBs
Position
complement(654711..658085)
Genome browser
AA seq
1124 aa
AA seq
DB search
MNIDKELTTILKNNSNLKKIKEFLEKNTFFSLAGYEGFFKAFLIKKIKEYSKTGKIILIV
KDEHTLDKIKNDLKVITNQIFELNYFSPLVYKGIGSETTVFNKRIKFLINFYKKNPGIYI
TVLKSLLSKIPNKNTLLKNICKIEKNTKINKADIEKTLITLGYEKTLRVTIPGEFTIKGE
IINLYPFEEESPVKILLNFDKIEKIKKFDPLTQLEQNNEILELQILPKKEIIWNDEAINN
LKTKIKSVEYKKILEELNFKKETKIEEMFYPLVANTYLSDEIEKHTPIVNFEINNFEKEI
EKIHQEYEKLYKEAREAGKNTIDPKRIFLNSKTFNIKSNVLFSEIKSSKSKEIVEFKIES
KKSFFSNIILTKEELKTWLKNGFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLI
IEKEKIAIILESNIFDTGQKINKTFESSKTKAIDSFIEIEKNRHVVHINHGIGIFRQIKR
IKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGGDPKNIKLDKISSKTWIKNKANAK
KRIEEIADRLIELYSKRESIQGIKYPKDSELQLLFESEFPYDETPDQITAIKEIKKDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAIMGNKQVIVLSPTTILAEQHFNTFKKRFKNFPI
KIEVLSRFIRNNTEKRILKELKSGEIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKE
KEKLKEIRISVDCLTLSATPIPRSLHMSLIKLRDISVLKIPPKNRVKIEAYLEPFSELLI
KHAIESELSRDGQVFLVNHNIEELHYLKTLIEKLTPYARIAIIHGKLTGDEIENIMHNFI
EKAYQILLATTIIENGIDIPNANTIIINNANKFGLSQLYQLKGRVGRGSKKAYAYFLYQD
SEKLNERSIERLRAITEFSDLGSGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDCYLTM
LNKAIEKKMGKISSEDEVNIEINYNGFIPDNYAKNEQTKILIYKKIFEIQNEEESKKIRS
EIHDNFGPIPKEINSLLMLAELKILAKKLNITKLKETNKTLEIEYKDIESIPMKKIIEIL
QKHPNLLILNPSYQKSIFLSFKNIEKSEKMNYIYENINLLKTNT
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagataaagaactaacaacaatattaaaaaataattccaatttaaaaaaaatt
aaagaatttttagaaaaaaatacatttttttcattagcagggtatgaaggatttttcaaa
gcttttttaattaaaaaaatcaaagaatatagcaaaactggaaaaataatattaatagtt
aaagacgaacatacattagataaaatcaaaaatgatttaaaagtaattacaaatcaaatc
tttgagcttaactattttagtccccttgtatacaagggcattggctcagaaactacagtc
tttaacaaaagaatcaaattcttgatcaatttttataaaaaaaatcctggaatatacatt
acagtcttaaaatcattgctcagtaaaatacccaataaaaatacactactaaagaatata
tgtaaaattgaaaaaaatactaaaattaataaagcagacattgaaaaaactctaataaca
ttgggatatgagaaaacactcagagtaacaattccaggagaatttacaataaaaggagaa
attataaatttatacccttttgaagaagaaagtccggtaaaaattttactaaactttgac
aaaatagaaaaaataaaaaaattcgatcctttaacccaattagaacaaaacaatgaaatt
ttagaattacaaattcttccaaaaaaagaaatcatttggaatgatgaagccattaataac
ctaaaaacaaaaattaaatccgtcgaatataaaaagattcttgaagaattgaattttaaa
aaagaaacaaaaatagaagaaatgttttatccactagtagcaaatacttacttaagtgat
gagattgaaaaacacacacctattgtaaactttgaaattaacaatttcgaaaaagaaatt
gaaaaaatacaccaagaatatgaaaagctttataaagaagcaagagaagctggcaaaaat
acaattgatccaaaaagaattttcttaaattctaaaacctttaatataaaaagtaatgtt
ttattttcagaaattaaaagttctaaatccaaagaaattgtagaatttaaaattgaaagc
aagaaaagctttttttcaaatattatacttacaaaagaagagctcaaaacctggctaaaa
aatggatttaaaatcattattgcagcagaatctgaatcacaaaaagagaaacttaaatac
attttcaaagaattaccgaaagtatcaattgaggttttaaaaatatctagctctttgata
atagaaaaagaaaaaattgccattattcttgaatcaaatatctttgatacaggacaaaaa
ataaataaaacatttgaatcttcaaaaacaaaagctattgactcttttattgagattgag
aaaaatagacatgtagtccacataaaccatgggattggcatatttaggcaaattaagaga
ataaaaacaagttctcttgaaaaggattatattgagatcgaatatgctgaaggagaaaaa
ctatttattccaattgaacaaacaaatttaatccaaaaatacattgggggtgatcctaaa
aatattaaattggataaaattagttctaaaacatggataaaaaataaagcaaatgcaaaa
aaaagaatcgaagagattgcagatagactaatagaactttattcaaaaagagaaagcatt
caaggtattaaatatccaaaagatagcgaattacaattattatttgaatctgaatttcca
tacgatgaaactccagatcaaataacagcaataaaagaaatcaaaaaagacatgatgagt
ttcaaagtgatggatcgccttctttgtggagacgttggatttggaaaaactgaagtcgca
atgagagctgcgtttaaagctataatgggaaacaaacaagtcattgtactctcaccaaca
actatcttagcagaacagcatttcaatacattcaaaaaaagattcaaaaattttccaatc
aaaatagaagtattaagcagatttataagaaataacacagaaaaacggattttaaaagaa
ttgaaaagcggagaaattgacataataataggaacacacaaaattctttcaaaaaaattc
acctgtaaaaatttaggattaataataattgatgaagagcaaagatttggtgtaaaggaa
aaagaaaaacttaaagaaataagaatttcagttgattgtcttactctttctgcaacacca
attcccagatctcttcacatgtcactaattaaactaagagatatttcagtcttaaaaatt
cctcctaaaaacagagtaaaaatagaagcttatttagaaccgtttagtgaacttttaata
aaacatgctattgaaagcgaactatctcgagatggtcaagtttttttggtaaaccataat
attgaagaactgcattatttaaaaacgctaattgaaaaattaactccttatgcaaggatt
gcaataattcatggaaaacttacaggagacgagattgaaaatataatgcacaattttatt
gaaaaagcgtatcaaattttattggcaacaacaataattgaaaatggaatagacattcca
aatgcaaatacaataataattaacaatgcaaacaagtttggactttcacagttatatcaa
ctaaaaggaagagttggaagaggatcaaaaaaagcttatgcttattttttgtaccaagat
agcgaaaagctaaatgaacgctctattgaaagactaagagcaataaccgaattttcagat
ctaggatcaggatttaaaatagcaatgaaagatatggaaataaggggtgttgggaatttg
cttggtagagaacaacatggagaaattgaatcgatcggattggattgttatctaacaatg
ttaaacaaagcaattgaaaagaaaatgggaaaaatctcatcagaagacgaagttaatatt
gaaattaactataatggatttattcctgacaattatgcaaaaaatgaacagactaaaata
ctaatctacaaaaaaatctttgaaattcaaaatgaagaagaaagtaaaaagataagatca
gaaattcacgacaactttggcccaatacctaaagaaataaatagtctattgatgttagct
gaacttaagattttagcaaaaaagttaaacataacaaaactaaaagaaacaaacaagact
ttggaaatagaatataaagatatagaaagcattcccatgaaaaaaataatagaaatactc
caaaagcatcctaatttattaatattgaatccatcgtatcaaaaatcaatattcttaagc
tttaaaaatattgaaaaatctgaaaaaatgaattatatatatgaaaatattaacttacta
aaaacaaatacatag
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