Borreliella japonica: QIA21_04190
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Entry
QIA21_04190 CDS
T09309
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bjo
Borreliella japonica
Pathway
bjo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bjo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QIA21_04190 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bjo03021
]
QIA21_04190 (rpoD)
Transcription machinery [BR:
bjo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QIA21_04190 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
WKC88350
LinkDB
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Position
752284..754179
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AA seq
631 aa
AA seq
DB search
MSDLEKKYSKLIEGIITHLGNRKSLSFSELSSLLPDDILEPEILDYICSILDDRGIRLVN
KISELDLVDPEDGNDEEEVEIESDRNFMILDDGFQNGAGGDIDIDVKLDDCDEEDISVKE
YLGSGYIKSNVLKDNHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNE
GLVIENYYNLVNTIYSRMEREEFFKREKDKDKESSPDYYNKKKRIASFYKIPLKPIQDRL
ISYVDNKHRVYELGGDIFEKNLKRERLALKELLQDIPLYQDELRIFSDDYIDSANKIKDL
QRQQRIILNRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKEL
ERIEMYYEYPMDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDL
VQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLN
RETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIE
DKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTR
ERIRQIESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggatttggaaaagaaatattcgaagctgatagagggtattattactcatttggga
aatagaaaatctcttagttttagtgaattatcaagtttacttcccgatgacatattagag
ccagagattcttgattatatttgctcaatacttgatgatagaggaataaggttagttaat
aaaatttcagaattagatctggtcgatcctgaagatggaaatgatgaagaagaggtggag
attgaatctgatagaaattttatgatcttagatgatggttttcaaaatggtgcaggaggg
gatattgatattgatgttaagcttgatgattgtgacgaagaagatatttctgttaaggag
tatttaggctcagggtatattaaaagcaatgtcttgaaagataatcactcagaagatcca
ataaagctttatttaaaagaaataggaaaagagtttttattaacaggaaatcaagaagtt
gaacttgcaaagcaaatggattctggagagagcataattgagaatattcttaagaatgaa
ggacttgttatagaaaactattataatcttgttaataccatttattcaagaatggaaagg
gaagagttttttaaaagagaaaaagataaggataaagagagtagcccagattattataat
aaaaaaaaaagaattgcctctttttacaaaattcctttaaaaccaattcaagatcgttta
ataagttatgtagataataagcatagggtgtatgagcttgggggtgatatttttgaaaag
aatttaaaaagagagagattggccttaaaagagcttttgcaagacattcctttatatcaa
gatgaactaaggattttttcagatgattatattgactctgctaacaaaataaaggatttg
caaagacagcaaagaataattctaaacaggttgaagattgagaaaataagagacttaagg
gtgcttggaagagatttgactattgctgaaaaaagaatagagatagaaaaatctcttaaa
cttaaagaagatgctattaaagagcaaattacagaggctcaacttgctcaaaaagaactt
gagagaattgaaatgtattatgaatatccaatggataaaataataagcatgtcagaagag
attgctaagggaaaacaaatgatgcagcatgctaaagatcagttgattaaggctaattta
aggcttgttgtaagcattgctaagaaatatgcaaatagagggcttcatttttttgatctt
gttcaagaaggtaatattggattaattaaagctgttgaaaagtttgagtacaaaagaggt
tttaagttttcaacttatgctacctggtggattagacaagccataacgagatctatttct
gatcaagctcgcacaattagagttcctgtacatatgattgaacaaataaataggcttaat
agagaaactagatatttaattcaagttttaggaaaagatcccacggatgaagagctctca
gacagacttggatgggaacttaaaaaggttaaaactgtgaaaagtgtttcaagagagccc
gtttctcttgaaacaccaattggagaagaggaagattctgttcttagtgattttattgag
gacaaagcaataaaaaatcccgcaaatcacacatcctttgtagttttgcaagatcaaata
agagcaattcttggaactcttcctgaaagagagcaagaagttgtaaaaatgagatttgga
cttgaagatggttattctttaactcttgaagaggttgggcttcattttaatgttacaaga
gaaagaattaggcaaattgaatctaaggcattaaggcgacttaaaaatcccaaaaaaact
caaaaattaaaagattatcttgaggatttaaattga
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