Bradyrhizobium japonicum E109: RN69_01235
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Entry
RN69_01235 CDS
T03509
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN69_01235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bjp03019
]
RN69_01235
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_01235
Enzymes [BR:
bjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RN69_01235
Messenger RNA biogenesis [BR:
bjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RN69_01235
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RN69_01235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
RecQ_Zn_bind
DEAD
Helicase_C
HHH
Fic-like_C
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJA59206
LinkDB
All DBs
Position
complement(248058..249923)
Genome browser
AA seq
621 aa
AA seq
DB search
MSAPSTAPLPAPANGRDALSVLHSVFGLPGFRGAQGEIIRHVSDGGNCLVLMPTGGGKSL
CYQLPSLLREGCGIVVSPLIALMRDQVAGLLEAGVNAAALNSSLTLQEASDIERRLIAGD
LDLLYVAPERLVTPRCLSLLAQAKVALFAIDEAHCVSQWGHDFRPEYVGLSIIAERFPNV
PRIALTATADELTRKEIVERLRLADSPQFVSSFDRPNIRYEIVDKRNAVSQLKEFIRERH
TGDAGVVYCLSRNRVEEVAAALDDAGIAALPYHAGLDSSIRSRNQDRFLNEDGIVIVATI
AFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSAAWMAYGLSDIVQQRRMIDE
SSGSDDFKRVSIGKLDALVGLAETAQCRRKRLLAYFGEAETAHNCGNCDNCLTPPKMRDG
KVLAQKLLSCAYRTGQRFGAMQLIDVLIGRLTEKVTQFGHDKLSVFGIGRELNETQWRTV
LRQLVAMGHLYSDSEAFGALKLTESARGVLRGETEVWLREEAPGTRVRASRTKSRRGDLA
PAANAPQGDVDPELRARLRSWRSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVP
GIGDKKLEHYGDELLQIVKTR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctccctccaccgccccgctgcctgcgccggccaacggccgcgacgcgctgtcg
gtgctgcattcggtgttcggcctgccggggttccgcggcgcgcagggcgagatcatccgg
cacgtctcggatggcggcaattgcctggtcttgatgccgaccggcggcggcaagtcgctg
tgctatcaattgccgtcactgctgcgcgaaggctgcggtatcgtggtgtcgccgctgatc
gcgctgatgcgcgaccaggtcgccggcctgctcgaggccggggtcaatgccgccgcgctg
aactcgtcgctgacgttgcaggaggcttccgacatcgagcgccgcctgatcgcgggcgat
ctcgacctgctctatgtcgcgccggaacgcctggtgacgccgcgctgcctgtcgctgctg
gcgcaggcgaaggtcgcgctgttcgcgatcgacgaggcgcattgcgtctcgcaatggggc
catgacttccgccccgaatatgtcggcctctccatcatcgccgaacgttttccgaacgtt
ccgcgcatcgcgctgaccgcgaccgccgacgagctgacgcgcaaggagatcgtcgagcgc
ctccggctcgccgacagcccgcaattcgtctccagcttcgatcgcccgaatatccgctac
gagatcgtagacaagcgcaatgccgtgtcgcagctgaaagaattcatccgggagcggcat
acgggcgacgccggcgtggtctattgcctgtcgcgcaatcgcgtcgaggaggttgccgcc
gcgctcgacgacgccggcattgcggcgctgccctatcacgccgggctcgacagcagcata
cgctcgcgcaaccaggaccggttcctcaacgaggacggcatcgtcatcgtcgcgaccatc
gccttcggcatgggcatcgacaagcccgacgtccgcttcgtcgcccatctcgatctgccc
aagagcatcgaggcctattatcaggagacggggcgcgccggccgcgacggcaagccgtcg
gcggcctggatggcctatggtctttccgacatcgtgcagcagcgccgcatgatcgacgag
tccagcggttctgacgatttcaagcgggtgtcgatcggcaagctcgacgcactggtcggc
ctcgccgagaccgcgcagtgccggcgcaagcggctgctcgcctatttcggcgaggcggag
acggcgcacaattgcggcaattgcgacaactgcctgacgccgcccaagatgcgcgacggc
aaggtgctggcgcagaagctgctgtcctgcgcctatcgcaccgggcagcgtttcggtgcg
atgcagctgatcgacgtgctgattggtcgtcttaccgagaaggtgacgcagttcggccac
gacaaattgtccgtgttcggcatcgggcgcgagctgaacgagacgcagtggcgcacggtg
ttgcggcagctggtggcgatgggccatttgtacagcgacagcgaggcgttcggcgcgctg
aagctgacggagagcgcgcgcggcgtgctacgcggcgagaccgaggtgtggctgcgcgag
gaagcgccgggcacgcgtgttcgcgcgagccggactaaatcccgccgtggtgacctcgcg
cctgcggccaacgcgccgcagggcgatgtcgatcccgaattgcgggcgcggctgaggtcc
tggcgttcggacatcgcgcgcgaacgcggggtgccggcctatgtcgtgctgcacgatgcc
accatcgacggcatcgtccgggcctggccgacgacgctggacgagctccgcaacgtgccc
ggcatcggcgacaagaagctcgagcattacggcgatgaactgctccagatcgtcaagacg
cggtaa
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