Bradyrhizobium japonicum E109: RN69_03745
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Entry
RN69_03745 CDS
T03509
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RN69_03745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_03745
Enzymes [BR:
bjp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RN69_03745
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RN69_03745
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RN69_03745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJA59625
LinkDB
All DBs
Position
797019..797918
Genome browser
AA seq
299 aa
AA seq
DB search
MPELPEVETVRRGLQPVMEGAKILVAEARRPDLRFPFQPDFVARLQGQVVTGLGRRAKYL
MADLASGDVLLMHLGMSGSFRVIKPDNEAAPGEFHYPRGKDSTHDHVLFRMSSGADIVFN
DPRRFGYMKVIARKVLEDEPLLRDLGPEPLGNEFDAAMLARSCEGKTTSLKAALLDQRVV
AGLGNIYVCEALHRSHLSPRRIAATLATKGRKSVGGSEPTDHAKRLVSAIHTVLNDAIKA
GGSSLRDHRQTSGELGYFQHSFKVYDREGETCKTPGCGGTIKRFTQNGRSTFWCAKCQK
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcccgaagtcgagaccgtccgccgcggccttcagcccgtcatggagggt
gcgaaaatcctcgtcgcggaggcccgcaggccggatctgcgctttcccttccagcccgat
ttcgtggcccggctccaggggcaggtcgtcacggggcttggccgccgtgcaaaatatctc
atggccgatctcgcctccggcgacgtgctgctgatgcatctaggcatgtcgggctcgttc
cgcgtcatcaagccggacaacgaggccgcgccgggcgagtttcactacccgcgcggtaag
gactccacgcacgaccacgtgctgtttcggatgtcctccggcgccgacatcgtgttcaac
gacccgcgccgcttcggttacatgaaagtgatcgcgcgcaaagtgcttgaggacgagccg
ctgctgcgcgatctcggtcccgagccgctcggcaacgaattcgacgccgcgatgctggcg
cggtcgtgcgagggcaagacgacgagcctgaaggccgcgctactcgaccagcgcgtggtc
gccgggctcggcaacatctatgtctgcgaagcgctgcatcgctcgcatctgtcgccgcgt
cgcattgctgcgacgctcgcgaccaagggtcgcaagagtgttggcggcagcgagccgacc
gatcatgcgaagcggctggtgagtgccattcacaccgtgctcaacgacgcgatcaaggcc
ggcggctccagcttgcgcgaccatcgccagacctcgggcgaactcggctatttccagcat
tccttcaaggtctatgaccgcgagggcgagacctgcaagacgccagggtgcggcggcacg
atcaagcgcttcacccagaacggccgttccaccttctggtgtgcgaaatgtcagaagtga
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