Bradyrhizobium japonicum E109: RN69_09230
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Entry
RN69_09230 CDS
T03509
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RN69_09230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_09230
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RN69_09230
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RN69_09230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
AAA_16
SWI2_SNF2
Kinesin
Microtub_bd
DUF87
DUF2963
eIF3_p135
SRP54
Motif
Other DBs
NCBI-ProteinID:
AJA66476
LinkDB
All DBs
Position
complement(1964828..1967329)
Genome browser
AA seq
833 aa
AA seq
DB search
MEALGVKATADALESLIREGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRFEIKSPYQPR
GDQPTAIAELVEGIQRNDRSQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLY
GEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLERD
DVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRQLIADLVALQYKRTQADFTRGTFR
VRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTGHKQDELEFIKMYANSHYVTPRP
TLVQAIKSIKSELKQRLDQLHDQGRLLEAQRLEQRTTFDLEMMEATGSCAGIENYSRYLT
GRLPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFRGDFRRKATLAEYGFRLPSCMDN
RPLRFEEWDMMRPQTVAVSATPGGWELNESGGVFVEQVIRPTGLIDPPVNIRPARTQVDD
LVGEVRATAQAGYRSLITVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEIIRDLRL
GAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGQVILYA
DQMTGSMERAIAETNRRREKQVEYNTANGITPESVKKQIGDILNSVYERDHVLVEVGGHD
MTDDVISIGHNFEAVLADLETRMREAAADLNFEEAARLRDEVKRLRATELAVVDDPTAKQ
RTVQVKAGAYAGTKKYGDAANLPVSAMKKKTVSSALKASGGGSGSKVHKPHLDEMHGPES
LPYRENPSLPSKPFGSTSRIIQPTDSRQSGPEFGPAPKSTGGQPGRRGGWKKR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgctcggcgtcaaggccaccgcggacgcgctggaatcgctgatccgcgagggc
cggccggaattccgcaaggacgacggctccaccaaggtgtggaccccgcaccggccgccg
cgcccggagaagtccgaaggcggcgtgcgcttcgagatcaaatcgccctaccagccgcgc
ggcgaccagccgaccgcgatcgccgaactcgtcgaaggcatccagcgtaacgaccgcagc
caagtgctgctcggcgtcaccggaagcggcaagacctacaccatggccaaggtgatcgag
gcgacgcagcggcccgccatcatcctggcgccgaacaagacgctcgccgcccagctctat
ggcgagttcaagagctttttccccgacaacgcggtcgagtatttcgtcagctattacgac
tactaccagccggaagcctacgttccacgcaccgacacctacatcgaaaaggattcttcg
atcaacgagcagatcgaccgcatgcgccactcggcgacgcgcgcgctgctcgaacgcgac
gacgtcatcatcgtggcgtcggtgtcctgcatctacggtatcggctcggtcgagacctac
accgcgatgaccttcgcgctgaaaaagggcgagcgcatcgaccagcgccagctcatcgcc
gacctcgtcgccctccagtacaagcgcacccaggccgattttacccgcggcacgtttcgc
gtgcgcggcgacgtcatcgacatcttcccggcgcactatgaggaccgggcctggcgcgtg
aacctgttcggcgacaccatcgagaccatcgaggagttcgatccgctcaccggccacaag
caggatgagctcgaattcatcaagatgtatgccaactcgcactacgtgacgccgcgcccg
acgctggtgcaggcgatcaagtcgatcaaatcggagctgaagcagcggctcgaccaactg
cacgaccagggccgtcttctggaagcgcagcggctggagcagcgcaccaccttcgatctc
gagatgatggaggcgacgggaagctgcgccggcatcgagaactattcgcgctatctcacc
gggcgcctgcccggcgagccgccgccgacgctgttcgaatacgtccccgacaacgcgctg
gtgttcgccgacgagagccacgtcaccgtgccgcagatcggcggcatgttccgcggcgac
ttccgccgcaaggcgacgctggccgaatacggcttccgtttgccctcctgcatggacaac
cgcccgctccgcttcgaggagtgggacatgatgcggccgcagacggttgcggtgtcggca
acgccgggcggctgggagctgaacgagagcggtggcgtgttcgtcgaacaggtgatcaga
ccgacggggctcattgatcctcccgtcaacatccgccccgcccgcacccaggtcgacgat
ctcgtcggcgaggtccgtgccaccgcccaggccggctaccgctcgctgatcaccgtgctc
accaagcgcatggcggaggacctcaccgaatatctgcatgagcaggggattcgcgtccgc
tacatgcactccgatatcgacaccatcgagcgcatcgagatcatccgggatctccgcctc
ggcgcgttcgacgcgctggtcggcatcaacctcttgcgcgaaggcctcgacattcccgaa
tgcgcgctggtcgcgattctggacgccgacaaggaaggttttttgcgcagtgaaacgtcc
ttgattcagaccatcggccgtgccgcgcgcaacgtcgacggccaggtgatcctctacgcc
gaccagatgacgggctcgatggagcgcgccatcgcggaaaccaaccggcgccgcgaaaag
caggtcgagtacaacaccgccaacggcatcacgccggagagtgtgaagaagcagatcggc
gacatcctcaactccgtctacgagcgcgaccacgtgctggtcgaggtcggcggccacgac
atgaccgacgacgtcatttcgatcggtcacaatttcgaagccgtgctcgccgatctcgaa
acccgtatgcgcgaggccgccgccgatctgaacttcgaggaagccgcccgcctccgcgac
gaagtcaagcgcctgcgcgccacggagctcgcggtggtcgacgaccccaccgccaagcaa
cgcaccgtgcaagtcaaggccggcgcctacgccggcaccaagaagtacggcgacgccgcg
aatttgcccgtcagcgccatgaagaagaaaaccgtgagctccgcgctgaaagccagcggc
ggcggcagcggctcgaaggtgcacaagccgcatctcgacgagatgcacgggccggagtcg
ttgccctaccgcgaaaacccgagcctgccgtcaaaaccgttcggcagcacgagccggatc
atccagccgacggactcacggcagtcgggaccggagttcgggcccgcgccgaagtcgacg
ggcgggcagccggggcgacggggtgggtggaagaagaggtag
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