Bradyrhizobium japonicum E109: RN69_09810
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Entry
RN69_09810 CDS
T03509
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RN69_09810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_09810
Enzymes [BR:
bjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RN69_09810
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RN69_09810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJA60657
UniProt:
A0AA87R4L0
LinkDB
All DBs
Position
complement(2086533..2087480)
Genome browser
AA seq
315 aa
AA seq
DB search
MSRTSTLPKRLQPMLATLTDAPFDDPDWVFEDKYDGFRMIAEIRRGKVALYSRNGKIISR
SYIEVAKALEGVKGDAVIDGELVAIGKDGISHFQLLQNALRHEAKLLYCAFDLMFENAVD
LRGEPLLERKKRLKAILPRNKLIAFSAHRKGNGTKFFTEAERKGLEGIMAKRADSSYASG
SRTSDWLKIKTAKRQEVVIAGFTAPKRTRPFFGALVLAVREDDAWRYIGHVGTGFSHKAL
EDLHAKLLKLRASKSPFPAKVKDEAATTWVRPSLVAEVKFAEWTGNGELRQPVYLGLRSD
KRAKDVVRERERLRK
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgagccggacgtcgaccctgcccaagcgcctgcagccgatgctcgctacccttaccgac
gcgccgttcgacgaccctgactgggttttcgaggacaagtacgacggcttccggatgatc
gcagaaatccggcggggcaaggttgcactctacagccgcaacggcaagatcatcagccgc
agctatattgaggtcgccaaagcgctggagggcgtgaagggcgacgctgtgatcgacgga
gagctcgtcgcgatcggaaaggacggcatctcgcatttccagttgcttcaaaacgcgcta
cgccatgaggcgaagctcctgtactgcgccttcgatctcatgtttgaaaacgcagtggac
ttgcgcggggagcctcttctcgagcgcaagaagcggctgaaggcaattctgccgcgcaac
aagctgatcgccttcagcgctcatcgcaaagggaacggtacgaaattcttcaccgaggcc
gagcggaagggtctcgaaggcatcatggcaaagcgcgccgacagttcgtatgcatccgga
agccggacctcggattggctgaagatcaagacggcaaagcgacaggaagtggtgatcgcc
ggcttcacggcgcccaagcgcaccaggccgttcttcggcgccctggtcctcgccgtgcgg
gaagacgacgcatggcgctacatcgggcatgtcggcactggcttcagccacaaggccctg
gaagatcttcatgccaagctcttgaagctgagggcctctaagtcaccctttcctgccaaa
gtgaaggacgaggccgccacgacctgggtcaggccctcgctggttgccgaggtcaaattc
gctgagtggaccggcaacggcgaactgcgccagcccgtctacctcgggctcaggtccgac
aagcgagcgaaggatgtcgtgcgcgaacgagaacgtttgcgcaaatag
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