Bradyrhizobium japonicum E109: RN69_26340
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Entry
RN69_26340 CDS
T03509
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03410
Base excision repair
bjp03430
Mismatch repair
bjp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RN69_26340
03430 Mismatch repair
RN69_26340
03440 Homologous recombination
RN69_26340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bjp03400
]
RN69_26340
DNA repair and recombination proteins [BR:
bjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RN69_26340
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RN69_26340
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RN69_26340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ATPgrasp_N
Motif
Other DBs
NCBI-ProteinID:
AJA63451
LinkDB
All DBs
Position
complement(5534802..5536643)
Genome browser
AA seq
613 aa
AA seq
DB search
MTPPATALPVEVPQAFLGVARSLTDKLWLDRLDARGAAKALAIVQRHQLPELLARALAGR
GIDIDGVSDFLDPTIRKLLPDPYTVTEMEAAAKRIADAAMRGEKVAIFGDYDVDGATSAA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNTEAIRALAAKGATLLVTVDCGTTSIEPLAEAK
RLGMSVVVIDHHQAGTELPEVDALVNPNRLDDLSGLGHLAAVGLVLVTLVAVNRELRQRG
FWTSEMPEPDLLGMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR
LNGPPEAWHLGFMLGPRVNAGGRIGRADLGVRLLLEGDSVEAARIAAELDRLNSERRVIE
QAAEAQAEAEALASIGLEDKIGVIVTASEGWHPGVVGLVASRLKEKFSRPAFAIALEPGG
IGTGSGRSIAGVDLGKAVRQAVTDGILLKGGGHAMAAGVTLRKEKLAEFRAYLENALAQD
VAEARHVNELYVDGAVSARAVTTELATTLNRAGPFGSGNPEVVLALPSHQLVHADEVGQA
HLRLRFKSGDGSIVNGIAFRSVGQKLGNALLANRGQQLHVAGSLSVDRYQGAERVQFRVV
DVALPDQGPSVIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcccgcaaccgccttgcccgtcgaagtgccccaggcgtttctgggcgtcgcg
cgctcgctcaccgacaagctttggctcgaccggctggatgcccgcggggcggccaaggcg
ctcgccatcgtgcagcggcaccagctgccggagctgttggcgcgggcgctggcgggccgc
ggcatcgacatcgatggcgtcagcgacttcctggatccgaccatccgcaagctgctgccg
gatccgtacactgtgacggaaatggaggccgccgcgaagcggatcgccgatgcggcgatg
cgcggcgagaaggtcgcgatcttcggcgactacgacgtcgacggcgcgacctcggcggcg
ctgctggcctggcatctgcgccattgcgggctcgatccgctgatccacattcccgaccgg
attttcgaaggctacggcccgaacaccgaagcgatccgcgcgctggccgccaagggcgcc
acgctgctcgtcacggtcgattgcggcaccaccagcatcgagccgctcgcggaagccaag
cgcctcggcatgtccgtggtcgtgatcgatcatcaccaggccggcacggagctgccggag
gtcgatgcgctggtcaatccgaaccggctcgacgatctctcgggcctcggccatctcgcc
gccgtcggtctcgtgctggtgacgctggtcgccgtcaaccgcgagctgcgccagcgcggc
ttctggacgagcgagatgcccgagcccgatctgctcggcatgctgcatcacgtcgcgctc
ggcacggttgcggatgtcgcaccgctgatcgggctcaatcgcgccttcgtcgcaaaaggc
ctgatcgcgatgcggcggcgcgaccatgtcggccacaccgcgctgatggacgtggcgcga
ctcaacggcccaccggaggcctggcatctcggattcatgctggggccgcgcgtcaatgcc
ggcggccgcatcggccgcgccgatctcggcgtgcggctcttgctcgaaggcgacagcgtc
gaggccgcgcggattgcggccgagctcgatcgcctcaacagcgagcgccgcgtcatcgag
caggcggccgaagcgcaggcggaagccgaggcgctggcctcgatcgggctcgaggacaag
attggcgtcatcgtcacggcctccgaggggtggcatcccggcgtggtcggcctcgtcgcg
tcccgcctgaaggagaagttttcacgaccggcctttgcgattgcgctggagcccggcggc
atcggtaccggctcgggccgctccatcgccggcgtcgatctcggcaaggcggtacggcag
gcggtgactgacggcatcttgctgaagggcggcggccacgcgatggccgctggcgtgacg
ttgcggaaggagaagctcgccgaattccgcgcttatctcgaaaatgcgctggcgcaggac
gttgccgaggcgcgccacgtcaacgagctctatgtcgacggcgcggtgtccgcgcgcgcc
gtgacgacggagcttgcgaccacgctcaaccgcgccggtcccttcggcagcggcaatccg
gaagtcgtgctggcgttgccatcgcatcagctcgtccatgccgacgaggtcggacaggcg
catttgaggctacgcttcaagtctggcgacggctcgatcgtcaacggtattgcattccgt
tcggtcggccagaagctcggcaatgcacttctcgccaatcgcggccagcaattgcatgtc
gcgggatcattgtcggtcgaccggtaccagggagcagagcgcgtgcaattccgcgtcgtc
gacgtcgcgctaccggaccaggggccatccgtgattagataa
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