Bradyrhizobium japonicum E109: RN69_26695
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Entry
RN69_26695 CDS
T03509
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bjp
Bradyrhizobium japonicum E109
Pathway
bjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN69_26695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bjp03019
]
RN69_26695
03009 Ribosome biogenesis [BR:
bjp03009
]
RN69_26695
Enzymes [BR:
bjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RN69_26695
Messenger RNA biogenesis [BR:
bjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RN69_26695
Ribosome biogenesis [BR:
bjp03009
]
Prokaryotic type
rRNA processing factors
RN69_26695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
AJA63514
LinkDB
All DBs
Position
5618821..5621937
Genome browser
AA seq
1038 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNAR
RRGQGERVRSDIVEGLEAGADPAAQPVEGEAPHTEGAPHEGEHLHADAEHRGEHDGQEHQ
DHDHQDHEHGEHDHHDHDHEGHDHHDHAHDDHHHDHDHGHDGQQDHHDHDHAGETPSPVA
AVGAEPVVATEAAAEPQEAVASEAHAEALAEAVTASTEPADAAYAAGESTDARHQESDEE
DDEDEDGEEAEEEHVESVGGDDVMEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERG
NKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILR
TAGAARTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEI
SVAGESGYREARDFMKMLMPANVSAVRQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGY
IVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDM
DEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGT
GHVRSVSSVALQLLRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTL
AVIADPSVSGPQAYLIDRGEQVHTLEAAKALLAAQAAASPPPLAEEAYDDEEFDPELESE
VETEETEGLAEEQAGGEAASDQDGQRRKRRRRRRGRGGPRDGELREDGAPASSEAAVAAS
EGEEDSESEQDGEEGEDQAARSEQQGNGDRRRRRGRRGGRRRRGGNEEGLAGSIGDELAA
SAPSEATDAVADFDSFGGEAAPSIAQAEHTTAEPQVSQPEPRAEVQIEAPAQPEPAPAPA
AADEEPADDKAARRRSTVREKVSFLSSSASEPATPVVAAPEPVAPPAPAAEPAPEAASET
PAAPRRAGWWSRRFGGGE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaggagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcccaacgcaagcaactgcgcggg
aatatctacctcgccaaggtcacccgggtggagccttcgctccaggctgcctttgttgaa
tatggcggcaaccgccacggcttcctcgccttcagcgaaatccatcccgactactaccag
atccccgtcgccgaccggcaggcactgatcgaggccgaggaacaggcccatcgcgaggcc
gaggaagagagcgagaaccgctcccacggccgccgccgctcgcgccaccgcaacgcccgc
cgccgcggtcaaggcgagcgcgtccgcagcgacatcgtcgagggtctcgaggccggcgcc
gatcccgcagcccagccggtcgagggcgaagctccgcacaccgagggcgcgccgcacgag
ggcgagcatctgcacgccgatgccgagcatcgcggcgagcacgacggccaagagcatcaa
gaccacgatcatcaagaccacgaacatggcgagcatgatcaccacgatcatgaccacgaa
ggccatgatcatcacgatcatgcgcacgacgaccaccatcacgatcatgaccatggtcat
gacggccagcaagatcaccatgaccatgatcatgccggcgagacgccctcgcctgtcgcg
gccgtcggcgccgagcccgtggtcgcgaccgaggccgctgccgaaccgcaggaggctgtc
gcctccgaggcccatgccgaggctctcgccgaagccgtgaccgcttccaccgaaccggcc
gacgccgcttacgctgccggcgaaagcactgatgcccgtcatcaggagtccgatgaggaa
gacgacgaggacgaggacggcgaggaagccgaagaggaacacgtcgaatccgtcggcggc
gacgacgtgatggaggaagtgccggagcgcaccttccgcccgcgccgccagtacaagatc
caggaagtcatcaagcgccgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggc
aacaagggcgcggcgctgaccacctacctctcgctcgccggccgctacgccgtgttgatg
ccgaacaccgcacgcggcggcggcatcagccgcaagatcacgagcgcccaggatcgttcc
cgcctgaaggaagttgtgcaggatctcgacgtgcccgagggcatgggcatcatcctgcgc
accgccggcgccgcccgcaccaagcccgagatcaagcgcgacttcgaatacctgatccgg
atgtgggagacggtgcgcgacctgacgctgaagtcgcaggccccgaccctggtctacgag
gaaggctcgctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgacgagatc
tcggtcgccggtgagtccggctaccgcgaagcgcgcgacttcatgaagatgctgatgccc
gccaatgtcagcgcggtgaggcagtatcgggacggccagccgctgttctcacgcatgggc
gtcgagagccagctggacgcgatgttctctccgaccgtgcagctgcgctccggcggctac
atcgtgatcaaccagaccgaggcgctagtctcgatcgacgtcaactccggacggtcgacc
cgcgagcaccatatcgaggacactgcgctcaagaccaatctggaagcggccgaagaggtc
gcccgccagctccgtctgcgcgacctcgccggcctgatcgtcatcgacttcatcgacatg
gacgagaagcgcaacaaccgtgcggtcgagcgcaagctgtccgattgcctgcggcaggac
cgcgcccggatccaggtcggccgcatctcgcatttcggcctgctcgagatgtcgcgccag
cgcatccgcgccagcgtgctggaatcctcgaccgatccctgcccgcattgcggcggcacc
ggccatgtccgctcggtctcctcggttgcgctccagcttttgcgcggcctcgaagagatc
ctgatgaagggcgcgacccacaatctcgtggtccgcacccgcaccgatgtcgcgctctat
gtgctgaaccacaagcgcggccatctgcgcgacctcgaaaacggcttcaaggtcacgctg
gccgtcatcgccgaccccagcgtcagcggaccgcaggcctatctcatcgaccgcggcgag
caggtgcatacgctggaagccgcgaaggcgctgctggcggcgcaggccgccgcaagcccg
ccgcccctagccgaagaagcctatgacgacgaggaattcgatccggagctggaatccgag
gtcgagaccgaagaaaccgaaggcctcgccgaggagcaggctggcggcgaagcggcttcc
gaccaggacggccagcgccgcaagcgccgccggcgtcggcgcggccgcggtggcccgcgc
gacggcgagttgcgcgaggatggcgctccggcgtcgtccgaagcggccgtggcggccagc
gaaggtgaagaggattccgagtccgagcaggacggcgaggaaggtgaggaccaggcggcc
cgcagcgagcagcagggcaacggcgatcgccgtcgccggcgtggtcgtcgcggtggacgc
cgccgtcgcggtggcaacgaggaaggtctcgccggctccatcggcgacgagctcgcagcc
agtgcgccgtcggaagcgaccgacgccgtcgccgatttcgacagcttcggcggcgaggct
gcgccctcgatcgcgcaggccgaacacaccaccgccgagcctcaggtcagccagcccgag
ccgcgcgccgaggtgcagattgaggcgccggcccagcctgagccggctcctgctccagcc
gccgcggacgaagagccggccgacgacaaggctgcgcgtcgccgctccacggtccgggaa
aaggtgagcttcctgtcgagcagcgcgagcgagccggcaacaccggttgtggcagcgcca
gagccggttgctccgcccgcaccggccgctgaacccgcaccggaagcggcaagcgaaact
ccggccgcaccgcgtcgcgccggctggtggtctcgccggttcggcggcggcgagtag
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