Bradyrhizobium japonicum E109: RN69_27500
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Entry
RN69_27500 CDS
T03509
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bjp
Bradyrhizobium japonicum E109
Brite
KEGG Orthology (KO) [BR:
bjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bjp03016
]
RN69_27500
Enzymes [BR:
bjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RN69_27500
Transfer RNA biogenesis [BR:
bjp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RN69_27500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AJA63650
LinkDB
All DBs
Position
5775642..5776790
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AA seq
382 aa
AA seq
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MDLITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASAEEAVVIDTLAEGI
DLKPFFDLMGNEGVLKVFHAARQDIEIIWHQASIIPHPVFDTQVAAMVLGYGDSIAYDAL
VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI
EMEVLTSPRTYDFHPERAWERLKTRVRKPKDLAVLMEVAAWREQEAQSRDVPRGRVLRDE
AISDIATHAPNTLEKLAHLRSVPKGFEKSKWGADIVAAVDRGLARDFATLPKLEKPRNNN
NGAAIVELLKVLLRMTAERHAVASKVIATVDDLEEIAADDEADVPALRGWRRELFGDAAL
KLKRGELALAIEKGRVIGVQRA
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggatttgattaccaccaccgctgacctcgcggctgcctgcagccggctggccaagcac
cctgtcatcacagtcgataccgagttcctacgcgagaccacctactacccgctgctgtgc
gtggtgcagatggcgagcgccgaggaagccgtggtgatcgacaccctggccgagggcatc
gacctcaagccgttcttcgacctgatgggcaacgagggcgtgctgaaggtattccatgcc
gcccgccaggacatcgagatcatctggcaccaggccagcatcatcccgcacccggtgttc
gacacccaggtcgcggccatggtgctcggctatggcgacagcatcgcctatgacgcgctg
gtcgagaaggtcaccggccaccgcccggacaagacccaccgcttcaccgactggtcgcgc
cggccgctgacgaaagagcagatgcactacgcggtgtccgacgtcacgcacctgcgcgac
gtgttcgccgcgctcgatgccgacctcaagaagcggcgccgcagcgagtgggtctccatc
gagatggaggttttgacctcgccccgcacttacgacttccaccccgagcgcgcctgggaa
cggctgaagacgcgggtccgcaagcccaaggacctcgcggtcctgatggaagtcgcggcc
tggcgcgagcaggaagcgcagagccgcgacgtgccgcgcggccgcgtgctgcgcgatgaa
gccatcagcgacatcgcgacccacgcgccgaacacgctggagaagctcgcccatctgcgc
tcggtgccgaaggggttcgagaaatccaaatggggcgcggacatcgtcgccgcggtcgac
cgcgggctggcgcgggactttgcaacgctgccgaagctggagaagccgcgcaacaacaac
aatggcgccgccatcgtcgagctgttgaaggtcctgctgcgcatgaccgcggagcgccac
gcggtcgccagcaaggtgatcgccaccgtcgacgatctcgaagagatcgcagccgacgac
gaggccgacgtccccgccctgcgcggctggcgccgcgagctgttcggcgatgccgccttg
aaactcaagcgcggcgagctggctctcgcgatcgagaagggtcgcgtgatcggggttcag
cgggcgtaa
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